GCA_013375475.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Archaea
Comparison to close relatives: Novosphingobium percolationis
Comparison to close relatives: Chalicogloea cavernicola
Comparison to close relatives: Croceicoccus hydrothermalis
Comparison to close relatives: Sphingorhabdus pacifica
Comparison to close relatives: Polymorphobacter megasporae
Comparison to close relatives: Erythrobacter jejuensis
Comparison to close relatives: Loriellopsis cavernicola
Comparison to close relatives: Zymomonas mobilis subsp. mobilis
Comparison to close relatives: Zymomonas mobilis subsp. pomaceae
Comparison to close relatives: Pedomonas mirosovicensis
Comparison to close relatives: Amazonocrinis nigriterrae
Comparison to close relatives: Cephalothrix komarekiana
Comparison to close relatives: Mariprofundus ferrooxydans
Comparison to close relatives: Ancylothrix terrestris
Comparison to close relatives: Prochlorothrix hollandica
Comparison to close relatives: Aestuariisphingobium litorale
Comparison to close relatives: Iphinoe spelaeobios
Comparison to close relatives: Desikacharya soli
Comparison to close relatives: Gloeomargarita lithophora
Comparison to close relatives: Sandarakinorhabdus cyanobacteriorum
Comparison to close relatives: Nostoc neudorfense
Comparison to close relatives: Amazonocrinis malviyae
Comparison to close relatives: Fortiea necridiiformans
Comparison to close relatives: Desikacharya nostocoides
Comparison to close relatives: Kryptousia macronema
Comparison to close relatives: Romeriopsis marina
Comparison to close relatives: Aliinostoc morphoplasticum
Comparison to close relatives: Sphingorhabdus rigui
Comparison to close relatives: Halotia longispora
Comparison to close relatives: Crinalium epipsammum
Comparison to close relatives: Sphingorhabdus wooponensis
Comparison to close relatives: Prochlorococcus marinus subsp. marinus
Comparison to close relatives: Alkalinema pantanalense
Comparison to close relatives: Desmonostoc salinum
Comparison to close relatives: Pantanalinema rosaneae
Comparison to close relatives: Halotia wernerae
Comparison to close relatives: Zymomonas mobilis subsp. francensis
Comparison to close relatives: Rubidibacter lacunae
Comparison to close relatives: Cephalothrix lacustris
Comparison to close relatives: Prochlorococcus marinus subsp. pastoris
Comparison to close relatives: Kryptousia microlepis
Comparison to close relatives: Planktothricoides raciborskii
Comparison to close relatives: Dendronalium phyllosphericum
Comparison to close relatives: Altererythrobacter aquiaggeris
Comparison to close relatives: Romeriopsis navalis
Comparison to close relatives: Halotia branconii
Comparison to close relatives: Foliisarcina bertiogensis
Comparison to close relatives: Halospirulina tapeticola
Comparison to close relatives: Phyllonema aviceniicola
Comparison to close relatives: Atlanticothrix silvestris
Comparison to close relatives: Chakrabartia godavariana
Comparison to close relatives: Parerythrobacter jejuensis
Comparison to close relatives: Zymomonas mobilis
Carbon source: starch
CAZyme: GH13
CAZyme: GH2
CAZyme: GH38
CAZyme: GH78
CAZyme: GH94
CAZyme: GH20
CAZyme: GH57
CAZyme: GH3
CAZyme: GH31
CAZyme: GH5
CAZyme: GH10
CAZyme: GH39
CAZyme: GH105
CAZyme: GH29
CAZyme: GH16
CAZyme: GH165
CAZyme: GH4
CAZyme: GH1
CAZyme: GH32
CAZyme: GH154
CAZyme: GH130
CAZyme: GH43

GCA_013375475.1 (CAZyme)
CAZyme: GH33
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: GH0
Occurance: 3

GCA_013375475.1 (CAZyme)
CAZyme: GH19
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: GH127
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: GH51
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: GT66
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: GT7
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: GT4
Occurance: 13

GCA_013375475.1 (CAZyme)
CAZyme: GT5
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: GT25
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: GT35
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: GT2
Occurance: 13

GCA_013375475.1 (CAZyme)
CAZyme: GT1
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: GT11
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: CE6
Occurance: 5

GCA_013375475.1 (CAZyme)
CAZyme: CE15
Occurance: 2

GCA_013375475.1 (CAZyme)
CAZyme: CE1
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: CE14
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: CBM32
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: CBM50
Occurance: 5

GCA_013375475.1 (CAZyme)
CAZyme: CBM67
Occurance: 1

GCA_013375475.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_013375475.1 (CAZyme)
CAZyme: CBM38
Occurance: 1

GCA_013375475.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_013375475.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_013375475.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_013375475.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_013375475.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_013375475.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_013375475.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_013375475.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_013375475.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_013375475.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_013375475.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCA_013375475.1 (Pathway)
Pathway: Pentose phosphate pathway, archaea, fructose 6P => ribose 5P
Metabolic module: M00580

GCA_013375475.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_013375475.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_013375475.1 (Pathway)
Pathway: C5 isoprenoid biosynthesis, mevalonate pathway, archaea
Metabolic module: M00849

GCA_013375475.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_013375475.1 (Pathway)
Pathway: Arabinoxylan degradation
Metabolic module: MF0001

GCA_013375475.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_013375475.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_013375475.1 (Pathway)
Pathway: Tyrosine degradation II
Metabolic module: MF0027

GCA_013375475.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_013375475.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_013375475.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_013375475.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_013375475.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_013375475.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_013375475.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_013375475.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCA_013375475.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_013375475.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 8
Relative abundance (%): 0.11

GCA_013375475.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.01

GCA_013375475.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0.4
Relative abundance (%): 0

GCA_013375475.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 57.7
Relative abundance (%): 2.86

GCA_013375475.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 43.4
Relative abundance (%): 2.9

GCA_013375475.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 2.7
Relative abundance (%): 0

GCA_013375475.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 2.7
Relative abundance (%): 0.04

GCA_013375475.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 44.2
Relative abundance (%): 1.52

GCA_013375475.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 23.4
Relative abundance (%): 2.83

GCA_013375475.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 27.4
Relative abundance (%): 0.17

GCA_013375475.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.01

GCA_013375475.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 24.4
Relative abundance (%): 0.38

GCA_013375475.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 20.8
Relative abundance (%): 0.36

GCA_013375475.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 43.6
Relative abundance (%): 0.11

GCA_013375475.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 70.9
Relative abundance (%): 1.87

GCA_013375475.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 2.5
Relative abundance (%): 0.5

GCA_013375475.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 1.3
Relative abundance (%): 0.03

GCA_013375475.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 1.6
Relative abundance (%): 0.02

GCA_013375475.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.01

GCA_013375475.1 (MAGs)
MAGs: no MAG matches found