GCA_001429555.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Aeromicrobium wangtongii
Comparison to close relatives: Nocardioides seonyuensis
Comparison to close relatives: Aeromicrobium camelliae
Comparison to close relatives: Nocardioides cavernaquae
Comparison to close relatives: Aeromicrobium marinum
Comparison to close relatives: Aeromicrobium yanjiei
Comparison to close relatives: Nocardioides mangrovicus
Comparison to close relatives: Nocardioides caldifontis
Comparison to close relatives: Nocardioides solisilvae
Comparison to close relatives: Nocardioides massiliensis
Comparison to close relatives: Nocardioides gilvus
Comparison to close relatives: Nocardioides alkalitolerans
Comparison to close relatives: Nocardioides aurantiacus
Comparison to close relatives: Nocardioides mesophilus
Comparison to close relatives: Nocardioides alcanivorans
Comparison to close relatives: Aeromicrobium duanguangcaii
Comparison to close relatives: Nocardioides ginkgobilobae
Comparison to close relatives: Nocardioides yefusunii
Comparison to close relatives: Nocardioides cremeus
Comparison to close relatives: Nocardioides marmoriterrae
Comparison to close relatives: Nocardioides kribbensis
Comparison to close relatives: Nocardioides jensenii
Comparison to close relatives: Nocardioides daejeonensis
Comparison to close relatives: Nocardioides oceani
Comparison to close relatives: Nocardioides dubius
Comparison to close relatives: Nocardioides donggukensis
Comparison to close relatives: Nocardioides lianchengensis
Comparison to close relatives: Aeromicrobium choanae
Comparison to close relatives: Nocardioides marmorisolisilvae
Comparison to close relatives: Marmoricola endophyticus
Comparison to close relatives: Nocardioides pacificus
Comparison to close relatives: Aeromicrobium alkaliterrae
Comparison to close relatives: Nocardioides phosphati
Comparison to close relatives: Nocardioides marmoriginsengisoli
Comparison to close relatives: Nocardioides jishulii
Comparison to close relatives: Nocardioides daedukensis
Comparison to close relatives: Solicola gregarius
Comparison to close relatives: Nocardioides pocheonensis
Comparison to close relatives: Nocardioides echinoideorum
Comparison to close relatives: Aeromicrobium ginsengisoli
Comparison to close relatives: Nocardioides scoriae
Comparison to close relatives: Nocardioides ungokensis
Comparison to close relatives: Nocardioides houyundeii
Comparison to close relatives: Nocardioides marmoribigeumensis
Comparison to close relatives: Nocardioides campestrisoli
Comparison to close relatives: Nocardioides abyssi
Comparison to close relatives: Nocardioides ochotonae
Comparison to close relatives: Nocardioides pantholopis
Comparison to close relatives: Nocardioides dongkuii
Comparison to close relatives: Nocardioides cavernae
Carbon source: starch
CAZyme: GH13
CAZyme: GH38
CAZyme: GH6
CAZyme: GH31
CAZyme: GH43
CAZyme: GH65
CAZyme: GH16
CAZyme: GH28
CAZyme: GH15
CAZyme: GH101
CAZyme: GH73
CAZyme: GH23
CAZyme: GH3
CAZyme: GH19
CAZyme: GH1
CAZyme: GH0
CAZyme: GH135
CAZyme: GH26
CAZyme: GH25
CAZyme: GH114
CAZyme: GT2
CAZyme: GT4
CAZyme: GT35
CAZyme: GT51
CAZyme: GT0

GCA_001429555.1 (CAZyme)
CAZyme: GT26
Occurance: 5

GCA_001429555.1 (CAZyme)
CAZyme: GT39
Occurance: 1

GCA_001429555.1 (CAZyme)
CAZyme: GT1
Occurance: 10

GCA_001429555.1 (CAZyme)
CAZyme: GT20
Occurance: 2

GCA_001429555.1 (CAZyme)
CAZyme: GT28
Occurance: 5

GCA_001429555.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_001429555.1 (CAZyme)
CAZyme: GT81
Occurance: 1

GCA_001429555.1 (CAZyme)
CAZyme: CE14
Occurance: 6

GCA_001429555.1 (CAZyme)
CAZyme: CE4
Occurance: 4

GCA_001429555.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_001429555.1 (CAZyme)
CAZyme: CE1
Occurance: 1

GCA_001429555.1 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_001429555.1 (CAZyme)
CAZyme: CBM5
Occurance: 9

GCA_001429555.1 (CAZyme)
CAZyme: CBM57
Occurance: 3

GCA_001429555.1 (CAZyme)
CAZyme: CBM50
Occurance: 14

GCA_001429555.1 (CAZyme)
CAZyme: CBM12
Occurance: 2

GCA_001429555.1 (CAZyme)
CAZyme: CBM32
Occurance: 1

GCA_001429555.1 (CAZyme)
CAZyme: CBM48
Occurance: 6

GCA_001429555.1 (CAZyme)
CAZyme: CBM38
Occurance: 2

GCA_001429555.1 (CAZyme)
CAZyme: CBM2
Occurance: 10

GCA_001429555.1 (CAZyme)
CAZyme: CBM13
Occurance: 4

GCA_001429555.1 (CAZyme)
CAZyme: CBM51
Occurance: 4

GCA_001429555.1 (CAZyme)
CAZyme: CBM0
Occurance: 1

GCA_001429555.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_001429555.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_001429555.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001429555.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_001429555.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001429555.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001429555.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001429555.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001429555.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_001429555.1 (Pathway)
Pathway: Methionine biosynthesis, aspartate => homoserine => methionine
Metabolic module: M00017

GCA_001429555.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_001429555.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_001429555.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_001429555.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001429555.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001429555.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_001429555.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_001429555.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_001429555.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001429555.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_001429555.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001429555.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_001429555.1 (Pathway)
Pathway: Acylglycerol degradation
Metabolic module: M00098

GCA_001429555.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_001429555.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001429555.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_001429555.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_001429555.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001429555.1 (Pathway)
Pathway: NADH:quinone oxidoreductase, prokaryotes
Metabolic module: M00144

GCA_001429555.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_001429555.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_001429555.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_001429555.1 (Pathway)
Pathway: Dissimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00530

GCA_001429555.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001429555.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_001429555.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_001429555.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_001429555.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_001429555.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_001429555.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_001429555.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_001429555.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCA_001429555.1 (Pathway)
Pathway: Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme
Metabolic module: M00926

GCA_001429555.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_001429555.1 (Pathway)
Pathway: Proline metabolism
Metabolic module: M00972

GCA_001429555.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_001429555.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001429555.1 (Pathway)
Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf
Metabolic module: M01004

GCA_001429555.1 (Pathway)
Pathway: Adenine ribonucleotide degradation, AMP => Urate
Metabolic module: M00958

GCA_001429555.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_001429555.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_001429555.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001429555.1 (Pathway)
Pathway: Tetrahydrofolate biosynthesis, GTP => THF
Metabolic module: M00126

GCA_001429555.1 (Pathway)
Pathway: Betaine biosynthesis, choline => betaine
Metabolic module: M00555

GCA_001429555.1 (Pathway)
Pathway: Siroheme biosynthesis, glutamyl-tRNA => siroheme
Metabolic module: M00846

GCA_001429555.1 (Pathway)
Pathway: Tyrosine degradation I
Metabolic module: MF0026

GCA_001429555.1 (Pathway)
Pathway: Alanine degradation I
Metabolic module: MF0033

GCA_001429555.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_001429555.1 (Pathway)
Pathway: Isoleucine degradation
Metabolic module: MF0036

GCA_001429555.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_001429555.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_001429555.1 (Pathway)
Pathway: Glutamine degradation I
Metabolic module: MF0046

GCA_001429555.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001429555.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_001429555.1 (Pathway)
Pathway: Bifidobacterium shunt
Metabolic module: MF0065

GCA_001429555.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_001429555.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_001429555.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_001429555.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_001429555.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_001429555.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_001429555.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_001429555.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_001429555.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 6.9
Relative abundance (%): 0.09

GCA_001429555.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0

GCA_001429555.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 1.7
Relative abundance (%): 0.01

GCA_001429555.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 20.1
Relative abundance (%): 0.33

GCA_001429555.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 5.1
Relative abundance (%): 0.14

GCA_001429555.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 7.9
Relative abundance (%): 0.02

GCA_001429555.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 3
Relative abundance (%): 0.04

GCA_001429555.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 2.2
Relative abundance (%): 0.07

GCA_001429555.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 36.9
Relative abundance (%): 0.29

GCA_001429555.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 43
Relative abundance (%): 0.33

GCA_001429555.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.03

GCA_001429555.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 19.8
Relative abundance (%): 0.03

GCA_001429555.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 19.5
Relative abundance (%): 0.07

GCA_001429555.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 72.7
Relative abundance (%): 0.25

GCA_001429555.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 10.5
Relative abundance (%): 0.01

GCA_001429555.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.06

GCA_001429555.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 3.6
Relative abundance (%): 0.02

GCA_001429555.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 8.7
Relative abundance (%): 0.05

GCA_001429555.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.19

GCA_001429555.1 (MAGs)
MAGs: no MAG matches found