GCA_001404055.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Martelella endophytica
Comparison to close relatives: Brucella microti
Comparison to close relatives: Hongsoonwoonella zoysiae
Comparison to close relatives: Stappia albiluteola
Comparison to close relatives: Hoeflea phototrophica
Comparison to close relatives: Stappia indica
Comparison to close relatives: Chthonobacter rhizosphaerae
Comparison to close relatives: Pseudovibrio flavus
Comparison to close relatives: Pseudovibrio exalbescens
Comparison to close relatives: Breoghania corrubedonensis
Comparison to close relatives: Roseibium salinum
Comparison to close relatives: Roseibium suaedae
Comparison to close relatives: Chenggangzhangella methanolivorans
Comparison to close relatives: Roseibium polysiphoniae
Comparison to close relatives: Roseibium marinum
Comparison to close relatives: Pseudovibrio axinellae
Comparison to close relatives: Pseudovibrio hongkongensis
Comparison to close relatives: Segnochrobactrum spirostomi
Comparison to close relatives: Pseudovibrio japonicus
Comparison to close relatives: Pannonibacter carbonis
Comparison to close relatives: Roseibium alexandrii
Comparison to close relatives: Pseudovibrio denitrificans
Comparison to close relatives: Roseibium litorale
Comparison to close relatives: Pannonibacter indicus
Comparison to close relatives: Pseudovibrio ascidiaceicola
Comparison to close relatives: Brucella melitensis
Comparison to close relatives: Stappia taiwanensis
Comparison to close relatives: Brucella cytisi
Comparison to close relatives: Brucella anthropi
Comparison to close relatives: Zhengella mangrovi
Comparison to close relatives: Brucella lupini
Comparison to close relatives: Roseibium aquae
Comparison to close relatives: Pleomorphomonas oryzae
Comparison to close relatives: Pseudovibrio stylochi
Comparison to close relatives: Roseibium aestuarii
Comparison to close relatives: Albibacter methylovorans
Comparison to close relatives: Pseudoxanthobacter liyangensis
Comparison to close relatives: Salaquimonas pukyongi
Comparison to close relatives: Roseibium denhamense
Comparison to close relatives: Roseibium limicola
Comparison to close relatives: Roseibium sediminis
Comparison to close relatives: Phyllobacterium endophyticum
Comparison to close relatives: Roseibium aggregatum
Comparison to close relatives: Martelella mediterranea
Comparison to close relatives: Roseibium album
Comparison to close relatives: Lutibaculum baratangense
Comparison to close relatives: Pannonibacter phragmitetus
Comparison to close relatives: Mesorhizobium wenxiniae
Comparison to close relatives: Stappia stellulata
Comparison to close relatives: Roseibium hamelinense
CAZyme: GH13
CAZyme: GH6
CAZyme: GH2
CAZyme: GH65
CAZyme: GH36
CAZyme: GH16
CAZyme: GH23
CAZyme: GH28
CAZyme: GH32
CAZyme: GH19
CAZyme: GH20
CAZyme: GH42
CAZyme: GH108
CAZyme: GH101
CAZyme: GH43
CAZyme: GH154
CAZyme: GH105
CAZyme: GH0
CAZyme: GH1
CAZyme: GH63
CAZyme: GH103
CAZyme: GH5
CAZyme: GH35
CAZyme: GH102
CAZyme: GH18
CAZyme: GH135

GCA_001404055.1 (CAZyme)
CAZyme: GH3
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: GH114
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: GH25
Occurance: 2

GCA_001404055.1 (CAZyme)
CAZyme: GH24
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: GT2
Occurance: 27

GCA_001404055.1 (CAZyme)
CAZyme: GT13
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: GT51
Occurance: 6

GCA_001404055.1 (CAZyme)
CAZyme: GT4
Occurance: 33

GCA_001404055.1 (CAZyme)
CAZyme: GT0
Occurance: 6

GCA_001404055.1 (CAZyme)
CAZyme: GT83
Occurance: 3

GCA_001404055.1 (CAZyme)
CAZyme: GT107
Occurance: 2

GCA_001404055.1 (CAZyme)
CAZyme: GT26
Occurance: 3

GCA_001404055.1 (CAZyme)
CAZyme: GT1
Occurance: 17

GCA_001404055.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: GT30
Occurance: 2

GCA_001404055.1 (CAZyme)
CAZyme: GT28
Occurance: 3

GCA_001404055.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: GT17
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: GT8
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: PL12
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: PL0
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: PL35
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: PL5
Occurance: 2

GCA_001404055.1 (CAZyme)
CAZyme: CE9
Occurance: 7

GCA_001404055.1 (CAZyme)
CAZyme: CE4
Occurance: 4

GCA_001404055.1 (CAZyme)
CAZyme: CE14
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: CE11
Occurance: 3

GCA_001404055.1 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: CBM5
Occurance: 4

GCA_001404055.1 (CAZyme)
CAZyme: CBM41
Occurance: 8

GCA_001404055.1 (CAZyme)
CAZyme: CBM50
Occurance: 18

GCA_001404055.1 (CAZyme)
CAZyme: CBM2
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: CBM6
Occurance: 2

GCA_001404055.1 (CAZyme)
CAZyme: CBM32
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_001404055.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_001404055.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_001404055.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_001404055.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_001404055.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001404055.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_001404055.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001404055.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001404055.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001404055.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001404055.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_001404055.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_001404055.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_001404055.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_001404055.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001404055.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001404055.1 (Pathway)
Pathway: GABA (gamma-Aminobutyrate) shunt
Metabolic module: M00027

GCA_001404055.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001404055.1 (Pathway)
Pathway: Leucine degradation, leucine => acetoacetate + acetyl-CoA
Metabolic module: M00036

GCA_001404055.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_001404055.1 (Pathway)
Pathway: Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate
Metabolic module: M00046

GCA_001404055.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_001404055.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_001404055.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_001404055.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001404055.1 (Pathway)
Pathway: D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P
Metabolic module: M00061

GCA_001404055.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_001404055.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001404055.1 (Pathway)
Pathway: Phosphatidylcholine (PC) biosynthesis, PE => PC
Metabolic module: M00091

GCA_001404055.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_001404055.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_001404055.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_001404055.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_001404055.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001404055.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_001404055.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001404055.1 (Pathway)
Pathway: Polyamine biosynthesis, arginine => ornithine => putrescine
Metabolic module: M00134

GCA_001404055.1 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_001404055.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_001404055.1 (Pathway)
Pathway: Cytochrome bd ubiquinol oxidase
Metabolic module: M00153

GCA_001404055.1 (Pathway)
Pathway: Cytochrome c oxidase, cbb3-type
Metabolic module: M00156

GCA_001404055.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), light
Metabolic module: M00169

GCA_001404055.1 (Pathway)
Pathway: Cytochrome o ubiquinol oxidase
Metabolic module: M00417

GCA_001404055.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_001404055.1 (Pathway)
Pathway: Denitrification, nitrate => nitrogen
Metabolic module: M00529

GCA_001404055.1 (Pathway)
Pathway: Dissimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00530

GCA_001404055.1 (Pathway)
Pathway: Assimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00531

GCA_001404055.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001404055.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_001404055.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_001404055.1 (Pathway)
Pathway: Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA
Metabolic module: M00741

GCA_001404055.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_001404055.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_001404055.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCA_001404055.1 (Pathway)
Pathway: Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate
Metabolic module: M00948

GCA_001404055.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_001404055.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_001404055.1 (Pathway)
Pathway: Dimethylsulfoniopropionate (DMSP) degradation, demethylation pathway, DMSP => methanethiol
Metabolic module: M00990

GCA_001404055.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_001404055.1 (Pathway)
Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA
Metabolic module: M00999

GCA_001404055.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001404055.1 (Pathway)
Pathway: UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA
Metabolic module: M01014

GCA_001404055.1 (Pathway)
Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA
Metabolic module: M01036

GCA_001404055.1 (Pathway)
Pathway: Guanine ribonucleotide degradation, GMP => Urate
Metabolic module: M00959

GCA_001404055.1 (Pathway)
Pathway: Adenine ribonucleotide degradation, AMP => Urate
Metabolic module: M00958

GCA_001404055.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_001404055.1 (Pathway)
Pathway: Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
Metabolic module: M00896

GCA_001404055.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_001404055.1 (Pathway)
Pathway: Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a, c-diamide
Metabolic module: M00924

GCA_001404055.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_001404055.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_001404055.1 (Pathway)
Pathway: Histidine degradation, histidine => N-formiminoglutamate => glutamate
Metabolic module: M00045

GCA_001404055.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001404055.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_001404055.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_001404055.1 (Pathway)
Pathway: C1-unit interconversion, prokaryotes
Metabolic module: M00140

GCA_001404055.1 (Pathway)
Pathway: Betaine biosynthesis, choline => betaine
Metabolic module: M00555

GCA_001404055.1 (Pathway)
Pathway: Arabinoxylan degradation
Metabolic module: MF0001

GCA_001404055.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_001404055.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_001404055.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_001404055.1 (Pathway)
Pathway: Ribose degradation
Metabolic module: MF0020

GCA_001404055.1 (Pathway)
Pathway: Xylose degradation
Metabolic module: MF0021

GCA_001404055.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_001404055.1 (Pathway)
Pathway: Glutamate degradation II
Metabolic module: MF0031

GCA_001404055.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_001404055.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_001404055.1 (Pathway)
Pathway: Isoleucine degradation
Metabolic module: MF0036

GCA_001404055.1 (Pathway)
Pathway: Leucine degradation
Metabolic module: MF0037

GCA_001404055.1 (Pathway)
Pathway: Methionine degradation II
Metabolic module: MF0039

GCA_001404055.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_001404055.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_001404055.1 (Pathway)
Pathway: Glutamine degradation I
Metabolic module: MF0046

GCA_001404055.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001404055.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_001404055.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_001404055.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_001404055.1 (Pathway)
Pathway: Arginine degradation IV
Metabolic module: MF0054

GCA_001404055.1 (Pathway)
Pathway: Histidine degradation
Metabolic module: MF0056

GCA_001404055.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_001404055.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_001404055.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_001404055.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_001404055.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_001404055.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_001404055.1 (Pathway)
Pathway: Lactate consumption II
Metabolic module: MF0080

GCA_001404055.1 (Pathway)
Pathway: Urea degradation
Metabolic module: MF0085

GCA_001404055.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_001404055.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_001404055.1 (Pathway)
Pathway: Lactate production
Metabolic module: MF0092

GCA_001404055.1 (Pathway)
Pathway: Propionate production II
Metabolic module: MF0094

GCA_001404055.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 2.5
Relative abundance (%): 0.24

GCA_001404055.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.01

GCA_001404055.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.01

GCA_001404055.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 5.6
Relative abundance (%): 0.05

GCA_001404055.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 33.3
Relative abundance (%): 0.35

GCA_001404055.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 1.2
Relative abundance (%): 0.01

GCA_001404055.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.01

GCA_001404055.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 14.2
Relative abundance (%): 0.05

GCA_001404055.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 4
Relative abundance (%): 0.41

GCA_001404055.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 3.4
Relative abundance (%): 0.03

GCA_001404055.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 1.4
Relative abundance (%): 0.03

GCA_001404055.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 7.2
Relative abundance (%): 0.06

GCA_001404055.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 9.7
Relative abundance (%): 0.1

GCA_001404055.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.05

GCA_001404055.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 7.4
Relative abundance (%): 0.03

GCA_001404055.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.17

GCA_001404055.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 1.3
Relative abundance (%): 0.01

GCA_001404055.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001404055.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.09

GCA_001404055.1 (MAGs)
MAGs: no MAG matches found