GCA_001403775.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Brachybacterium subflavum
Comparison to close relatives: Brachybacterium kimchii
Comparison to close relatives: Brachybacterium halotolerans
Comparison to close relatives: Brachybacterium nesterenkovii
Comparison to close relatives: Ornithinimicrobium pratense
Comparison to close relatives: Arthrobacter silvisoli
Comparison to close relatives: Helcobacillus massiliensis
Comparison to close relatives: Brachybacterium rhamnosum
Comparison to close relatives: Brachybacterium huguangmaarense
Comparison to close relatives: Brachybacterium muris
Comparison to close relatives: Brachybacterium zhongshanense
Comparison to close relatives: Brachybacterium phenoliresistens
Comparison to close relatives: Brachybacterium fresconis
Comparison to close relatives: Brachybacterium aquaticum
Comparison to close relatives: Brachybacterium faecium
Comparison to close relatives: Brachybacterium hainanense
Comparison to close relatives: Pedococcus dokdonensis
Comparison to close relatives: Glutamicibacter ardleyensis
Comparison to close relatives: Brachybacterium squillarum
Comparison to close relatives: Paeniglutamicibacter antarcticus
Comparison to close relatives: Citricoccus nitrophenolicus
Comparison to close relatives: Brachybacterium alimentarium
Comparison to close relatives: Zhihengliuella flava
Comparison to close relatives: Brachybacterium avium
Comparison to close relatives: Cellulosimicrobium fucosivorans
Comparison to close relatives: Brachybacterium conglomeratum
Comparison to close relatives: Brachybacterium tyrofermentans
Comparison to close relatives: Brachybacterium paraconglomeratum
Comparison to close relatives: Arthrobacter nanjingensis
Comparison to close relatives: Terrabacter carboxydivorans
Comparison to close relatives: Micrococcus antarcticus
Comparison to close relatives: Brachybacterium vulturis
Comparison to close relatives: Brachybacterium saurashtrense
Comparison to close relatives: Glutamicibacter halophytocola
Comparison to close relatives: Glutamicibacter arilaitensis
Comparison to close relatives: Dermabacter jinjuensis
Comparison to close relatives: Arthrobacter ipis
Comparison to close relatives: Devriesea agamarum
Comparison to close relatives: Glutamicibacter bergerei
Comparison to close relatives: Brachybacterium endophyticum
Comparison to close relatives: Arthrobacter globiformis
Comparison to close relatives: Rothia halotolerans
Comparison to close relatives: Dermabacter vaginalis
Comparison to close relatives: Glutamicibacter mysorens
Comparison to close relatives: Brachybacterium horti
Comparison to close relatives: Glutamicibacter endophyticus
Comparison to close relatives: Rarobacter faecitabidus
Comparison to close relatives: Dermabacter hominis
Comparison to close relatives: Brachybacterium sacelli
Comparison to close relatives: Micrococcus terreus
Comparison to close relatives: Cellulosimicrobium composti
Comparison to close relatives: Glutamicibacter nicotianae
Carbon source: starch
CAZyme: GH13
CAZyme: GH38
CAZyme: GH2
CAZyme: GH6
CAZyme: GH31
CAZyme: GH65
CAZyme: GH3
CAZyme: GH16
CAZyme: GH36
CAZyme: GH28
CAZyme: GH4
CAZyme: GH0
CAZyme: GH101
CAZyme: GH20
CAZyme: GH15
CAZyme: GH125
CAZyme: GH23
CAZyme: GH32
CAZyme: GH5
CAZyme: GH76
CAZyme: GH1
CAZyme: GH25
CAZyme: GH105

GCA_001403775.1 (CAZyme)
CAZyme: GH130
Occurance: 4

GCA_001403775.1 (CAZyme)
CAZyme: GH43
Occurance: 2

GCA_001403775.1 (CAZyme)
CAZyme: GT2
Occurance: 18

GCA_001403775.1 (CAZyme)
CAZyme: GT4
Occurance: 19

GCA_001403775.1 (CAZyme)
CAZyme: GT97
Occurance: 1

GCA_001403775.1 (CAZyme)
CAZyme: GT35
Occurance: 1

GCA_001403775.1 (CAZyme)
CAZyme: GT51
Occurance: 2

GCA_001403775.1 (CAZyme)
CAZyme: GT13
Occurance: 1

GCA_001403775.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_001403775.1 (CAZyme)
CAZyme: GT39
Occurance: 1

GCA_001403775.1 (CAZyme)
CAZyme: GT1
Occurance: 1

GCA_001403775.1 (CAZyme)
CAZyme: GT0
Occurance: 2

GCA_001403775.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_001403775.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_001403775.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_001403775.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_001403775.1 (CAZyme)
CAZyme: CE4
Occurance: 3

GCA_001403775.1 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_001403775.1 (CAZyme)
CAZyme: CE14
Occurance: 1

GCA_001403775.1 (CAZyme)
CAZyme: CE1
Occurance: 1

GCA_001403775.1 (CAZyme)
CAZyme: CBM48
Occurance: 9

GCA_001403775.1 (CAZyme)
CAZyme: CBM50
Occurance: 7

GCA_001403775.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_001403775.1 (CAZyme)
CAZyme: CBM38
Occurance: 1

GCA_001403775.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_001403775.1 (CAZyme)
CAZyme: CBM2
Occurance: 2

GCA_001403775.1 (Pathway)
Pathway: Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate
Metabolic module: M00001

GCA_001403775.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_001403775.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001403775.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_001403775.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001403775.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001403775.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001403775.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_001403775.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001403775.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001403775.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_001403775.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_001403775.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_001403775.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001403775.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_001403775.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001403775.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001403775.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_001403775.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001403775.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_001403775.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, bacteria
Metabolic module: M00364

GCA_001403775.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, archaea
Metabolic module: M00365

GCA_001403775.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_001403775.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001403775.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_001403775.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_001403775.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_001403775.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCA_001403775.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_001403775.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001403775.1 (Pathway)
Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf
Metabolic module: M01004

GCA_001403775.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_001403775.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_001403775.1 (Pathway)
Pathway: Pentose phosphate pathway (Pentose phosphate cycle)
Metabolic module: M00004

GCA_001403775.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_001403775.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001403775.1 (Pathway)
Pathway: C1-unit interconversion, prokaryotes
Metabolic module: M00140

GCA_001403775.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_001403775.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_001403775.1 (Pathway)
Pathway: Trehalose degradation II
Metabolic module: MF0012

GCA_001403775.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_001403775.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_001403775.1 (Pathway)
Pathway: Aspartate degradation II
Metabolic module: MF0029

GCA_001403775.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_001403775.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_001403775.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_001403775.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_001403775.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_001403775.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_001403775.1 (Pathway)
Pathway: Bifidobacterium shunt
Metabolic module: MF0065

GCA_001403775.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_001403775.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_001403775.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_001403775.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_001403775.1 (Pathway)
Pathway: Pyruvate:formate lyase
Metabolic module: MF0074

GCA_001403775.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_001403775.1 (Pathway)
Pathway: Ethanol production I
Metabolic module: MF0090

GCA_001403775.1 (Pathway)
Pathway: Lactate production
Metabolic module: MF0092

GCA_001403775.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 4.2
Relative abundance (%): 0.19

GCA_001403775.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.18

GCA_001403775.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 3.2
Relative abundance (%): 0.02

GCA_001403775.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 2.9
Relative abundance (%): 0.07

GCA_001403775.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 2.6
Relative abundance (%): 0.25

GCA_001403775.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 7.3
Relative abundance (%): 0.28

GCA_001403775.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 1.2
Relative abundance (%): 0.12

GCA_001403775.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.5
Relative abundance (%): 0

GCA_001403775.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 2.2
Relative abundance (%): 0.03

GCA_001403775.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 2.2
Relative abundance (%): 0.14

GCA_001403775.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 1
Relative abundance (%): 0.07

GCA_001403775.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 2.3
Relative abundance (%): 0.01

GCA_001403775.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 2.7
Relative abundance (%): 0.05

GCA_001403775.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 1
Relative abundance (%): 0.16

GCA_001403775.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 1.6
Relative abundance (%): 0.03

GCA_001403775.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.18

GCA_001403775.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.01

GCA_001403775.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 32.8
Relative abundance (%): 0.14

GCA_001403775.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 1.4
Relative abundance (%): 0.04

GCA_001403775.1 (MAGs)
MAGs: no MAG matches found