GCA_001399705.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Ktedonobacter robiniae
Comparison to close relatives: Nitrolancea hollandica
Comparison to close relatives: Herpetosiphon gulosus
Comparison to close relatives: Sandaracinobacter neustonicus
Comparison to close relatives: Sphingomonas mesophila
Comparison to close relatives: Ktedonobacter racemifer
Comparison to close relatives: Chloroflexus aurantiacus
Comparison to close relatives: Sandaracinobacteroides sayramense
Comparison to close relatives: Roseiflexus castenholzii
Comparison to close relatives: Arboricoccus pini
Comparison to close relatives: Herpetosiphon geysericola
Comparison to close relatives: Azospirillum soli
Comparison to close relatives: Acidimicrobium ferrooxidans
Comparison to close relatives: Herpetosiphon llansteffanensis
Comparison to close relatives: Sphingomonas citri
Comparison to close relatives: Ferruginivarius sediminum
Comparison to close relatives: Azospirillum canadense
Comparison to close relatives: Azospirillum rugosum
Comparison to close relatives: Caldilinea aerophila
Comparison to close relatives: Marinibaculum pumilum
Comparison to close relatives: Chloroflexus islandicus
Comparison to close relatives: Oscillochloris trichoides
Comparison to close relatives: Chloroflexus aggregans
Comparison to close relatives: Dictyobacter arantiisoli
Comparison to close relatives: Sphingomonas flavalba
Comparison to close relatives: Novosphingobium arabidopsis
Comparison to close relatives: Sphingomonas citricola
Comparison to close relatives: Sphingomonas crocodyli
Comparison to close relatives: Dehalogenimonas lykanthroporepellens
Comparison to close relatives: Herpetosiphon giganteus
Comparison to close relatives: Aggregatilinea lenta
Comparison to close relatives: Sphingomonas jatrophae
Comparison to close relatives: Thermaurantiacus tibetensis
Comparison to close relatives: Sphingomonas formosensis
Comparison to close relatives: Ktedonospora formicarum
Comparison to close relatives: Sphingomonas hominis
Comparison to close relatives: Sphingomonas guangdongensis
Comparison to close relatives: Sphingomonas phyllosphaerae
Comparison to close relatives: Tengunoibacter tsumagoiensis
Comparison to close relatives: Sphingomonas leidyi
Comparison to close relatives: Sphingomonas gilva
Comparison to close relatives: Kallotenue papyrolyticum
Comparison to close relatives: Sphingomonas roseiflava
Comparison to close relatives: Sphaerobacter thermophilus
Comparison to close relatives: Dictyobacter kobayashii
Comparison to close relatives: Pedomonas mirosovicensis
Comparison to close relatives: Dictyobacter formicarum
Comparison to close relatives: Herpetosiphon aurantiacus
Comparison to close relatives: Dehalogenimonas formicexedens
Comparison to close relatives: Dehalogenimonas etheniformans
Comparison to close relatives: Sandaracinobacteroides sayramensis
Carbon source: starch
Carbon source: dextran
CAZyme: GH66
CAZyme: GH13
CAZyme: GH78
CAZyme: GH38
CAZyme: GH16
CAZyme: GH2
CAZyme: GH43
CAZyme: GH32
CAZyme: GH20
CAZyme: GH127
CAZyme: GH3
CAZyme: GH55
CAZyme: GH39
CAZyme: GH44
CAZyme: GH87
CAZyme: GH6
CAZyme: GH5
CAZyme: GH101
CAZyme: GH95
CAZyme: GH0
CAZyme: GH77
CAZyme: GH36
CAZyme: GH51

GCA_001399705.1 (CAZyme)
CAZyme: GH4
Occurance: 4

GCA_001399705.1 (CAZyme)
CAZyme: GH35
Occurance: 2

GCA_001399705.1 (CAZyme)
CAZyme: GH15
Occurance: 3

GCA_001399705.1 (CAZyme)
CAZyme: GH29
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: GH65
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: GH116
Occurance: 2

GCA_001399705.1 (CAZyme)
CAZyme: GH42
Occurance: 4

GCA_001399705.1 (CAZyme)
CAZyme: GH140
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: GH99
Occurance: 4

GCA_001399705.1 (CAZyme)
CAZyme: GH1
Occurance: 7

GCA_001399705.1 (CAZyme)
CAZyme: GH109
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: GH31
Occurance: 5

GCA_001399705.1 (CAZyme)
CAZyme: GH19
Occurance: 3

GCA_001399705.1 (CAZyme)
CAZyme: GH130
Occurance: 2

GCA_001399705.1 (CAZyme)
CAZyme: GH23
Occurance: 4

GCA_001399705.1 (CAZyme)
CAZyme: GH105
Occurance: 5

GCA_001399705.1 (CAZyme)
CAZyme: GH114
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: GH10
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: GH73
Occurance: 4

GCA_001399705.1 (CAZyme)
CAZyme: GH125
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: GH57
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: GH18
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: GT2
Occurance: 58

GCA_001399705.1 (CAZyme)
CAZyme: GT4
Occurance: 73

GCA_001399705.1 (CAZyme)
CAZyme: GT51
Occurance: 5

GCA_001399705.1 (CAZyme)
CAZyme: GT35
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: GT1
Occurance: 7

GCA_001399705.1 (CAZyme)
CAZyme: GT83
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: GT26
Occurance: 7

GCA_001399705.1 (CAZyme)
CAZyme: GT28
Occurance: 7

GCA_001399705.1 (CAZyme)
CAZyme: GT0
Occurance: 4

GCA_001399705.1 (CAZyme)
CAZyme: GT5
Occurance: 2

GCA_001399705.1 (CAZyme)
CAZyme: GT76
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: GT21
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: GT9
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: CE9
Occurance: 2

GCA_001399705.1 (CAZyme)
CAZyme: CE14
Occurance: 7

GCA_001399705.1 (CAZyme)
CAZyme: CE11
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: CE4
Occurance: 4

GCA_001399705.1 (CAZyme)
CAZyme: CE12
Occurance: 6

GCA_001399705.1 (CAZyme)
CAZyme: CE1
Occurance: 2

GCA_001399705.1 (CAZyme)
CAZyme: CBM42
Occurance: 2

GCA_001399705.1 (CAZyme)
CAZyme: CBM35
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: CBM50
Occurance: 24

GCA_001399705.1 (CAZyme)
CAZyme: CBM67
Occurance: 4

GCA_001399705.1 (CAZyme)
CAZyme: CBM48
Occurance: 11

GCA_001399705.1 (CAZyme)
CAZyme: CBM38
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: CBM5
Occurance: 6

GCA_001399705.1 (CAZyme)
CAZyme: CBM57
Occurance: 2

GCA_001399705.1 (CAZyme)
CAZyme: CBM13
Occurance: 3

GCA_001399705.1 (CAZyme)
CAZyme: CBM12
Occurance: 4

GCA_001399705.1 (CAZyme)
CAZyme: CBM32
Occurance: 4

GCA_001399705.1 (CAZyme)
CAZyme: CBM6
Occurance: 2

GCA_001399705.1 (CAZyme)
CAZyme: CBM2
Occurance: 12

GCA_001399705.1 (CAZyme)
CAZyme: CBM34
Occurance: 2

GCA_001399705.1 (CAZyme)
CAZyme: CBM20
Occurance: 2

GCA_001399705.1 (CAZyme)
CAZyme: CBM9
Occurance: 1

GCA_001399705.1 (CAZyme)
CAZyme: CBM51
Occurance: 2

GCA_001399705.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001399705.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_001399705.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001399705.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001399705.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001399705.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001399705.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001399705.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001399705.1 (Pathway)
Pathway: Methionine degradation
Metabolic module: M00035

GCA_001399705.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_001399705.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_001399705.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_001399705.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001399705.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_001399705.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001399705.1 (Pathway)
Pathway: Phosphatidylcholine (PC) biosynthesis, PE => PC
Metabolic module: M00091

GCA_001399705.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_001399705.1 (Pathway)
Pathway: Acylglycerol degradation
Metabolic module: M00098

GCA_001399705.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001399705.1 (Pathway)
Pathway: Polyamine biosynthesis, arginine => ornithine => putrescine
Metabolic module: M00134

GCA_001399705.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCA_001399705.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001399705.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_001399705.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_001399705.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCA_001399705.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001399705.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_001399705.1 (Pathway)
Pathway: GDP-D-Rha biosynthesis, GDP-Man => GDP-D-Rha
Metabolic module: M01018

GCA_001399705.1 (Pathway)
Pathway: GDP-D-Rha4N biosynthesis, Fru-6P => GDP-D-Rha4N
Metabolic module: M01006

GCA_001399705.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_001399705.1 (Pathway)
Pathway: Glycogen biosynthesis, glucose-1P => glycogen/starch
Metabolic module: M00854

GCA_001399705.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_001399705.1 (Pathway)
Pathway: Arabinoxylan degradation
Metabolic module: MF0001

GCA_001399705.1 (Pathway)
Pathway: Fructan degradation
Metabolic module: MF0002

GCA_001399705.1 (Pathway)
Pathway: Starch degradation
Metabolic module: MF0005

GCA_001399705.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_001399705.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_001399705.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_001399705.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_001399705.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_001399705.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_001399705.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_001399705.1 (Pathway)
Pathway: Arginine degradation IV
Metabolic module: MF0054

GCA_001399705.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_001399705.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_001399705.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCA_001399705.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_001399705.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.1

GCA_001399705.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001399705.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001399705.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.14

GCA_001399705.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.02

GCA_001399705.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001399705.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001399705.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001399705.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.03

GCA_001399705.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.01

GCA_001399705.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001399705.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 23.5
Relative abundance (%): 0.06

GCA_001399705.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 9.7
Relative abundance (%): 0.05

GCA_001399705.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.3
Relative abundance (%): 0

GCA_001399705.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001399705.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001399705.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001399705.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_001399705.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001399705.1 (MAGs)
MAGs: no MAG matches found