GCA_001314625.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Glycocaulis abyssi
Comparison to close relatives: Glycocaulis albus
Comparison to close relatives: Glycocaulis alkaliphilus
Comparison to close relatives: Glycocaulis profundi
Comparison to close relatives: Marinicauda algicola
Comparison to close relatives: Photocaulis sulfatitolerans
Comparison to close relatives: Marinicauda salina
Comparison to close relatives: Photocaulis rubescens
Comparison to close relatives: Alkalicaulis satelles
Comparison to close relatives: Marinicauda pacifica
Comparison to close relatives: Oceanicaulis alexandrii
Comparison to close relatives: Maricaulis maris
Comparison to close relatives: Maricaulis washingtonensis
Comparison to close relatives: Maricaulis salignorans
Comparison to close relatives: Oceanicaulis stylophorae
Comparison to close relatives: Hyphobacterium vulgare
Comparison to close relatives: Woodsholea maritima
Comparison to close relatives: Hyphobacterium indicum
Comparison to close relatives: Maricaulis virginensis
Comparison to close relatives: Maricaulis parjimensis
Comparison to close relatives: Oricola cellulosilytica
Comparison to close relatives: Lutibaculum baratangense
Comparison to close relatives: Butyratibacter algicola
Comparison to close relatives: Afifella pfennigii
Comparison to close relatives: Rhizobium etli
Comparison to close relatives: Cereibacter sphaeroides
Comparison to close relatives: Paroceanicella profunda
Comparison to close relatives: Dichotomicrobium thermohalophilum
Comparison to close relatives: Chelativorans intermedius
Comparison to close relatives: Oricola indica
Comparison to close relatives: Rhodobacter sediminicola
Comparison to close relatives: Tabrizicola algicola
Comparison to close relatives: Roseospirillum parvum
Comparison to close relatives: Cereibacter johrii
Comparison to close relatives: Rhodobacter megalophilus
Comparison to close relatives: Actibacterium pelagium
Comparison to close relatives: Mesorhizobium tamadayense
Comparison to close relatives: Mesorhizobium comanense
Comparison to close relatives: Mesorhizobium atlanticum
Comparison to close relatives: Thioclava dalianensis
Comparison to close relatives: Ensifer canadensis
Comparison to close relatives: Neotabrizicola shimadae
Comparison to close relatives: Thioclava atlantica
Comparison to close relatives: Amaricoccus kaplicensis
Comparison to close relatives: Rhodovulum sulfidophilum
Comparison to close relatives: Rhodopseudomonas julia
Comparison to close relatives: Cereibacter alkalitolerans
Comparison to close relatives: Thioclava indica
Comparison to close relatives: Thioclava pacifica
Comparison to close relatives: Hasllibacter halocynthiae
Comparison to close relatives: Pseudotabrizicola algicola
CAZyme: GH0
CAZyme: GH13
CAZyme: GH6
CAZyme: GH16
CAZyme: GH65
CAZyme: GH23
CAZyme: GH73
CAZyme: GH19
CAZyme: GH28
CAZyme: GH20
CAZyme: GH101
CAZyme: GH24
CAZyme: GH103
CAZyme: GH102
CAZyme: GH3
CAZyme: GH108
CAZyme: GT2
CAZyme: GT13
CAZyme: GT51
CAZyme: GT4
CAZyme: GT25
CAZyme: GT0
CAZyme: GT83
CAZyme: GT1
CAZyme: GT9

GCA_001314625.1 (CAZyme)
CAZyme: GT26
Occurance: 3

GCA_001314625.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_001314625.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_001314625.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_001314625.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_001314625.1 (CAZyme)
CAZyme: PL0
Occurance: 6

GCA_001314625.1 (CAZyme)
CAZyme: CE6
Occurance: 1

GCA_001314625.1 (CAZyme)
CAZyme: CE11
Occurance: 2

GCA_001314625.1 (CAZyme)
CAZyme: CE4
Occurance: 3

GCA_001314625.1 (CAZyme)
CAZyme: CE14
Occurance: 1

GCA_001314625.1 (CAZyme)
CAZyme: CBM5
Occurance: 3

GCA_001314625.1 (CAZyme)
CAZyme: CBM41
Occurance: 1

GCA_001314625.1 (CAZyme)
CAZyme: CBM50
Occurance: 9

GCA_001314625.1 (CAZyme)
CAZyme: CBM51
Occurance: 2

GCA_001314625.1 (CAZyme)
CAZyme: CBM6
Occurance: 2

GCA_001314625.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_001314625.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_001314625.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001314625.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_001314625.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001314625.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001314625.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001314625.1 (Pathway)
Pathway: Glyoxylate cycle
Metabolic module: M00012

GCA_001314625.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001314625.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_001314625.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_001314625.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_001314625.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001314625.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001314625.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001314625.1 (Pathway)
Pathway: Leucine degradation, leucine => acetoacetate + acetyl-CoA
Metabolic module: M00036

GCA_001314625.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_001314625.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_001314625.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_001314625.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001314625.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_001314625.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001314625.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_001314625.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_001314625.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001314625.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001314625.1 (Pathway)
Pathway: NADH:quinone oxidoreductase, prokaryotes
Metabolic module: M00144

GCA_001314625.1 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_001314625.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_001314625.1 (Pathway)
Pathway: Cytochrome bd ubiquinol oxidase
Metabolic module: M00153

GCA_001314625.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_001314625.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), light
Metabolic module: M00169

GCA_001314625.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_001314625.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001314625.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_001314625.1 (Pathway)
Pathway: Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA
Metabolic module: M00741

GCA_001314625.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_001314625.1 (Pathway)
Pathway: Arginine biosynthesis, glutamate => acetylcitrulline => arginine
Metabolic module: M00845

GCA_001314625.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_001314625.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_001314625.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_001314625.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_001314625.1 (Pathway)
Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA
Metabolic module: M00999

GCA_001314625.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001314625.1 (Pathway)
Pathway: UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc
Metabolic module: M01009

GCA_001314625.1 (Pathway)
Pathway: UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA
Metabolic module: M01014

GCA_001314625.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_001314625.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_001314625.1 (Pathway)
Pathway: Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
Metabolic module: M00896

GCA_001314625.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_001314625.1 (Pathway)
Pathway: Histidine degradation, histidine => N-formiminoglutamate => glutamate
Metabolic module: M00045

GCA_001314625.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001314625.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_001314625.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_001314625.1 (Pathway)
Pathway: Tetrahydrofolate biosynthesis, GTP => THF
Metabolic module: M00126

GCA_001314625.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_001314625.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_001314625.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_001314625.1 (Pathway)
Pathway: Isoleucine degradation
Metabolic module: MF0036

GCA_001314625.1 (Pathway)
Pathway: Leucine degradation
Metabolic module: MF0037

GCA_001314625.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_001314625.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_001314625.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_001314625.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001314625.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_001314625.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_001314625.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_001314625.1 (Pathway)
Pathway: Histidine degradation
Metabolic module: MF0056

GCA_001314625.1 (Pathway)
Pathway: Glyoxylate bypass
Metabolic module: MF0063

GCA_001314625.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_001314625.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_001314625.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_001314625.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_001314625.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_001314625.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001314625.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001314625.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001314625.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001314625.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001314625.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001314625.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.26

GCA_001314625.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.09

GCA_001314625.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001314625.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_001314625.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001314625.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0.6
Relative abundance (%): 0.03

GCA_001314625.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_001314625.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001314625.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.04

GCA_001314625.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001314625.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001314625.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_001314625.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001314625.1 (MAGs)
MAGs: 3300000355_9.fna
Ecosystem: Generic

GCA_001314625.1 (MAGs)
MAGs: 3300000394_8.fna
Ecosystem: Generic