GCA_001312645.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Rhodococcus coprophilus
Comparison to close relatives: Rhodococcus phenolicus
Comparison to close relatives: Rhodococcus zopfii
Comparison to close relatives: Rhodococcus rhodochrous
Comparison to close relatives: Rhodococcus pyridinivorans
Comparison to close relatives: Rhodococcus ruber
Comparison to close relatives: Rhodococcus artemisiae
Comparison to close relatives: Rhodococcus biphenylivorans
Comparison to close relatives: Rhodococcus marinonascens
Comparison to close relatives: Nocardia coeliaca
Comparison to close relatives: Antrihabitans stalactiti
Comparison to close relatives: Rhodococcus pseudokoreensis
Comparison to close relatives: Tsukamurella wratislaviensis
Comparison to close relatives: Rhodococcus oxybenzonivorans
Comparison to close relatives: Rhodococcus erythropolis
Comparison to close relatives: Rhodococcus koreensis
Comparison to close relatives: Rhodococcus triatomae
Comparison to close relatives: Rhodococcus electrodiphilus
Comparison to close relatives: Rhodococcus qingshengii
Comparison to close relatives: Rhodococcus olei
Comparison to close relatives: Rhodococcus gannanensis
Comparison to close relatives: Rhodococcus rhodnii
Comparison to close relatives: Nocardia amamiensis
Comparison to close relatives: Nocardia globerula
Comparison to close relatives: Rhodococcus oryzae
Comparison to close relatives: Rhodococcus pedocola
Comparison to close relatives: Rhodococcus equi
Comparison to close relatives: Rhodococcus canchipurensis
Comparison to close relatives: Millisia brevis
Comparison to close relatives: Rhodococcus globerulus
Comparison to close relatives: Rhodococcus subtropicus
Comparison to close relatives: Nocardia shimofusensis
Comparison to close relatives: Nocardia arthritidis
Comparison to close relatives: Rhodococcus imtechensis
Comparison to close relatives: Rhodococcus opacus
Comparison to close relatives: Nocardia sputi
Comparison to close relatives: Nocardia pneumoniae
Comparison to close relatives: Nocardia pseudobrasiliensis
Comparison to close relatives: Nocardia higoensis
Comparison to close relatives: Nocardia thailandica
Comparison to close relatives: Nocardia exalbida
Comparison to close relatives: Rhodococcus soli
Comparison to close relatives: Nocardia gipuzkoensis
Comparison to close relatives: Nocardia yamanashiensis
Comparison to close relatives: Nocardia kroppenstedtii
Comparison to close relatives: Nocardia barduliensis
Comparison to close relatives: Nocardia aobensis
Comparison to close relatives: Gordonia polyisoprenivorans
Comparison to close relatives: Gordonia tangerina
Comparison to close relatives: Prescottella soli
Comparison to close relatives: Prescottella subtropica
Comparison to close relatives: Prescottella equi
Comparison to close relatives: Rhodococcus wratislaviensis
Comparison to close relatives: Rhodococcus baikonurensis
Carbon source: starch
CAZyme: GH4
CAZyme: GH23
CAZyme: GH3
CAZyme: GH2
CAZyme: GH28
CAZyme: GH77
CAZyme: GH13
CAZyme: GH6
CAZyme: GH101
CAZyme: GH43
CAZyme: GH65
CAZyme: GH57
CAZyme: GH0
CAZyme: GH135
CAZyme: GH63
CAZyme: GH15
CAZyme: GH76
CAZyme: GH19
CAZyme: GH1
CAZyme: GT1
CAZyme: GT53

GCA_001312645.1 (CAZyme)
CAZyme: GT4
Occurance: 19

GCA_001312645.1 (CAZyme)
CAZyme: GT51
Occurance: 5

GCA_001312645.1 (CAZyme)
CAZyme: GT2
Occurance: 20

GCA_001312645.1 (CAZyme)
CAZyme: GT25
Occurance: 1

GCA_001312645.1 (CAZyme)
CAZyme: GT26
Occurance: 3

GCA_001312645.1 (CAZyme)
CAZyme: GT0
Occurance: 8

GCA_001312645.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_001312645.1 (CAZyme)
CAZyme: GT35
Occurance: 2

GCA_001312645.1 (CAZyme)
CAZyme: GT87
Occurance: 3

GCA_001312645.1 (CAZyme)
CAZyme: GT83
Occurance: 1

GCA_001312645.1 (CAZyme)
CAZyme: GT39
Occurance: 1

GCA_001312645.1 (CAZyme)
CAZyme: GT89
Occurance: 2

GCA_001312645.1 (CAZyme)
CAZyme: GT21
Occurance: 1

GCA_001312645.1 (CAZyme)
CAZyme: GT85
Occurance: 2

GCA_001312645.1 (CAZyme)
CAZyme: GT20
Occurance: 3

GCA_001312645.1 (CAZyme)
CAZyme: GT81
Occurance: 2

GCA_001312645.1 (CAZyme)
CAZyme: CE14
Occurance: 7

GCA_001312645.1 (CAZyme)
CAZyme: CE0
Occurance: 4

GCA_001312645.1 (CAZyme)
CAZyme: CE4
Occurance: 2

GCA_001312645.1 (CAZyme)
CAZyme: CE6
Occurance: 1

GCA_001312645.1 (CAZyme)
CAZyme: CE5
Occurance: 5

GCA_001312645.1 (CAZyme)
CAZyme: CE9
Occurance: 2

GCA_001312645.1 (CAZyme)
CAZyme: CE1
Occurance: 10

GCA_001312645.1 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_001312645.1 (CAZyme)
CAZyme: CBM50
Occurance: 6

GCA_001312645.1 (CAZyme)
CAZyme: CBM48
Occurance: 5

GCA_001312645.1 (CAZyme)
CAZyme: CBM12
Occurance: 1

GCA_001312645.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_001312645.1 (CAZyme)
CAZyme: CBM2
Occurance: 5

GCA_001312645.1 (CAZyme)
CAZyme: CBM13
Occurance: 3

GCA_001312645.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_001312645.1 (CAZyme)
CAZyme: CBM57
Occurance: 1

GCA_001312645.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001312645.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001312645.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001312645.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001312645.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001312645.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_001312645.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001312645.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001312645.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001312645.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_001312645.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_001312645.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001312645.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001312645.1 (Pathway)
Pathway: Acylglycerol degradation
Metabolic module: M00098

GCA_001312645.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_001312645.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001312645.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_001312645.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001312645.1 (Pathway)
Pathway: UDP-Gal biosynthesis, Gal => UDP-Gal
Metabolic module: M00554

GCA_001312645.1 (Pathway)
Pathway: Catechol ortho-cleavage, catechol => 3-oxoadipate
Metabolic module: M00568

GCA_001312645.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_001312645.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_001312645.1 (Pathway)
Pathway: Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
Metabolic module: M00632

GCA_001312645.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_001312645.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCA_001312645.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001312645.1 (Pathway)
Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf
Metabolic module: M01004

GCA_001312645.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_001312645.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_001312645.1 (Pathway)
Pathway: beta-Oxidation
Metabolic module: M00087

GCA_001312645.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_001312645.1 (Pathway)
Pathway: Tyrosine degradation I
Metabolic module: MF0026

GCA_001312645.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_001312645.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_001312645.1 (Pathway)
Pathway: Glutamine degradation I
Metabolic module: MF0046

GCA_001312645.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001312645.1 (Pathway)
Pathway: Triacylglycerol degradation
Metabolic module: MF0064

GCA_001312645.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_001312645.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_001312645.1 (Pathway)
Pathway: Urea degradation
Metabolic module: MF0085

GCA_001312645.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_001312645.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_001312645.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 6.4
Relative abundance (%): 0.11

GCA_001312645.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.06

GCA_001312645.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 2
Relative abundance (%): 0.02

GCA_001312645.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 11.1
Relative abundance (%): 1.14

GCA_001312645.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 3.1
Relative abundance (%): 0.08

GCA_001312645.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 18.8
Relative abundance (%): 0.01

GCA_001312645.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 4.4
Relative abundance (%): 1.91

GCA_001312645.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 3
Relative abundance (%): 0.07

GCA_001312645.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 15.9
Relative abundance (%): 0.35

GCA_001312645.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 22.1
Relative abundance (%): 0.13

GCA_001312645.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.01

GCA_001312645.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 26.7
Relative abundance (%): 0.05

GCA_001312645.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 41.8
Relative abundance (%): 0.87

GCA_001312645.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 45.2
Relative abundance (%): 0.07

GCA_001312645.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 11.4
Relative abundance (%): 0.96

GCA_001312645.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 1.9
Relative abundance (%): 0.2

GCA_001312645.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 6.2
Relative abundance (%): 0.03

GCA_001312645.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 7.2
Relative abundance (%): 0.3

GCA_001312645.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 1.6
Relative abundance (%): 0.12

GCA_001312645.1 (MAGs)
MAGs: no MAG matches found