GCA_001306305.2
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Alteriqipengyuania abyssalis
Comparison to close relatives: Alteriqipengyuania lutimaris
Comparison to close relatives: Qipengyuania soli
Comparison to close relatives: Qipengyuania aerophila
Comparison to close relatives: Qipengyuania proteolytica
Comparison to close relatives: Erythrobacter pelagi
Comparison to close relatives: Qipengyuania pacifica
Comparison to close relatives: Qipengyuania qiaonensis
Comparison to close relatives: Qipengyuania aurantiaca
Comparison to close relatives: Erythrobacter aurantius
Comparison to close relatives: Erythrobacter citreus
Comparison to close relatives: Qipengyuania spongiae
Comparison to close relatives: Qipengyuania vesicularis
Comparison to close relatives: Qipengyuania polymorpha
Comparison to close relatives: Erythrobacter rubeus
Comparison to close relatives: Erythrobacter ani
Comparison to close relatives: Qipengyuania intermedia
Comparison to close relatives: Qipengyuania mesophila
Comparison to close relatives: Qipengyuania flava
Comparison to close relatives: Erythrobacter gaetbuli
Comparison to close relatives: Qipengyuania aestuarii
Comparison to close relatives: Qipengyuania psychrotolerans
Comparison to close relatives: Qipengyuania xiamenensis
Comparison to close relatives: Qipengyuania sphaerica
Comparison to close relatives: Qipengyuania huizhouensis
Comparison to close relatives: Qipengyuania marisflavi
Comparison to close relatives: Qipengyuania xiapuensis
Comparison to close relatives: Erythrobacter zhengii
Comparison to close relatives: Erythrobacter seohaensis
Comparison to close relatives: Qipengyuania gelatinilytica
Comparison to close relatives: Erythrobacter vulgaris
Comparison to close relatives: Erythromicrobium ramosum
Comparison to close relatives: Erythrobacter spongiae
Comparison to close relatives: Erythrobacter litoralis
Comparison to close relatives: Erythrobacter aquimaris
Comparison to close relatives: Erythrobacter crassostreae
Comparison to close relatives: Porphyrobacter donghaensis
Comparison to close relatives: Porphyrobacter neustonensis
Comparison to close relatives: Porphyrobacter tepidarius
Comparison to close relatives: Porphyrobacter sanguineus
Comparison to close relatives: Parapontixanthobacter aurantiacus
Comparison to close relatives: Porphyrobacter dokdonensis
Comparison to close relatives: Altererythrobacter flavus
Comparison to close relatives: Porphyrobacter colymbi
Comparison to close relatives: Erythrobacter atlanticus
Comparison to close relatives: Altererythrobacter lutimaris
Comparison to close relatives: Erythrobacter jejuensis
Comparison to close relatives: Altererythrobacter palmitatis
Comparison to close relatives: Parerythrobacter lacustris
Comparison to close relatives: Alteriqipengyuania flavescens
Comparison to close relatives: Qipengyuania pelagi
Comparison to close relatives: Qipengyuania citrea
Comparison to close relatives: Qipengyuania gaetbuli
Comparison to close relatives: Aurantiacibacter spongiae
Comparison to close relatives: Erythrobacter colymbi
Comparison to close relatives: Aurantiacibacter zhengii
Comparison to close relatives: Qipengyuania vulgaris
Comparison to close relatives: Erythrobacter donghaensis
Comparison to close relatives: Erythrobacter dokdonensis
Comparison to close relatives: Qipengyuania seohaensis
Comparison to close relatives: Erythrobacter sanguineus
Comparison to close relatives: Erythrobacter neustonensis
Comparison to close relatives: Qipengyuania aquimaris
Comparison to close relatives: Erythrobacter ramosus
Comparison to close relatives: Tsuneonella flava
Comparison to close relatives: Parerythrobacter jejuensis
Comparison to close relatives: Aurantiacibacter atlanticus
CAZyme: GH13
CAZyme: GH18
CAZyme: GH6
CAZyme: GH65
CAZyme: GH97
CAZyme: GH28
CAZyme: GH23
CAZyme: GH15
CAZyme: GH101

GCA_001306305.2 (CAZyme)
CAZyme: GH36
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: GH73
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: GH102
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: GH135
Occurance: 2

GCA_001306305.2 (CAZyme)
CAZyme: GH3
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: GH1
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: GH103
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: GH19
Occurance: 2

GCA_001306305.2 (CAZyme)
CAZyme: GH109
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: GH0
Occurance: 2

GCA_001306305.2 (CAZyme)
CAZyme: GH24
Occurance: 2

GCA_001306305.2 (CAZyme)
CAZyme: GH25
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: GH108
Occurance: 2

GCA_001306305.2 (CAZyme)
CAZyme: GT13
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: GT5
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: GT51
Occurance: 5

GCA_001306305.2 (CAZyme)
CAZyme: GT4
Occurance: 24

GCA_001306305.2 (CAZyme)
CAZyme: GT2
Occurance: 18

GCA_001306305.2 (CAZyme)
CAZyme: GT1
Occurance: 6

GCA_001306305.2 (CAZyme)
CAZyme: GT28
Occurance: 5

GCA_001306305.2 (CAZyme)
CAZyme: GT26
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: GT20
Occurance: 2

GCA_001306305.2 (CAZyme)
CAZyme: GT39
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: GT0
Occurance: 2

GCA_001306305.2 (CAZyme)
CAZyme: PL0
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: CE6
Occurance: 2

GCA_001306305.2 (CAZyme)
CAZyme: CE11
Occurance: 2

GCA_001306305.2 (CAZyme)
CAZyme: CE0
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: CE14
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: CBM41
Occurance: 2

GCA_001306305.2 (CAZyme)
CAZyme: CBM50
Occurance: 7

GCA_001306305.2 (CAZyme)
CAZyme: CBM5
Occurance: 4

GCA_001306305.2 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_001306305.2 (CAZyme)
CAZyme: CBM9
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: CBM32
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_001306305.2 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_001306305.2 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_001306305.2 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_001306305.2 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001306305.2 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_001306305.2 (Pathway)
Pathway: Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Metabolic module: M00008

GCA_001306305.2 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001306305.2 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001306305.2 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001306305.2 (Pathway)
Pathway: Glyoxylate cycle
Metabolic module: M00012

GCA_001306305.2 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001306305.2 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_001306305.2 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_001306305.2 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_001306305.2 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001306305.2 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001306305.2 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_001306305.2 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_001306305.2 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_001306305.2 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001306305.2 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_001306305.2 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_001306305.2 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_001306305.2 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_001306305.2 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001306305.2 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_001306305.2 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001306305.2 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_001306305.2 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_001306305.2 (Pathway)
Pathway: Cytochrome c oxidase, cbb3-type
Metabolic module: M00156

GCA_001306305.2 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_001306305.2 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), light
Metabolic module: M00169

GCA_001306305.2 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_001306305.2 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001306305.2 (Pathway)
Pathway: Anoxygenic photosystem II
Metabolic module: M00597

GCA_001306305.2 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_001306305.2 (Pathway)
Pathway: beta-Lactam resistance, Bla system
Metabolic module: M00627

GCA_001306305.2 (Pathway)
Pathway: Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA
Metabolic module: M00741

GCA_001306305.2 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_001306305.2 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_001306305.2 (Pathway)
Pathway: UDP-L-FucNAc biosynthesis, UDP-GlcNAc => UDP-L-FucNAc
Metabolic module: M00923

GCA_001306305.2 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_001306305.2 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_001306305.2 (Pathway)
Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA
Metabolic module: M00999

GCA_001306305.2 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001306305.2 (Pathway)
Pathway: UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA
Metabolic module: M01014

GCA_001306305.2 (Pathway)
Pathway: Spirilloxanthin biosynthesis, lycopene => spirilloxanthin
Metabolic module: M01039

GCA_001306305.2 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_001306305.2 (Pathway)
Pathway: Adenine ribonucleotide degradation, AMP => Urate
Metabolic module: M00958

GCA_001306305.2 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_001306305.2 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_001306305.2 (Pathway)
Pathway: Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
Metabolic module: M00896

GCA_001306305.2 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_001306305.2 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_001306305.2 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_001306305.2 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001306305.2 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_001306305.2 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_001306305.2 (Pathway)
Pathway: Tyrosine degradation I
Metabolic module: MF0026

GCA_001306305.2 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_001306305.2 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_001306305.2 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_001306305.2 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_001306305.2 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001306305.2 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_001306305.2 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_001306305.2 (Pathway)
Pathway: Glyoxylate bypass
Metabolic module: MF0063

GCA_001306305.2 (Pathway)
Pathway: Entner-Doudoroff pathway
Metabolic module: MF0066

GCA_001306305.2 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_001306305.2 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_001306305.2 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_001306305.2 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_001306305.2 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_001306305.2 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_001306305.2 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_001306305.2 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 4.9
Relative abundance (%): 0.12

GCA_001306305.2 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_001306305.2 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0.5
Relative abundance (%): 0

GCA_001306305.2 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 6.6
Relative abundance (%): 0.26

GCA_001306305.2 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 37.2
Relative abundance (%): 0.29

GCA_001306305.2 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 1.6
Relative abundance (%): 0.03

GCA_001306305.2 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 1.8
Relative abundance (%): 0.01

GCA_001306305.2 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 25.5
Relative abundance (%): 0.39

GCA_001306305.2 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 10.8
Relative abundance (%): 0.42

GCA_001306305.2 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 6.5
Relative abundance (%): 0.14

GCA_001306305.2 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.07

GCA_001306305.2 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 6.8
Relative abundance (%): 0.07

GCA_001306305.2 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 11.2
Relative abundance (%): 0.06

GCA_001306305.2 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 5.9
Relative abundance (%): 0.09

GCA_001306305.2 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 20.2
Relative abundance (%): 0.35

GCA_001306305.2 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.09

GCA_001306305.2 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 1.4
Relative abundance (%): 0.06

GCA_001306305.2 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 7.5
Relative abundance (%): 0.05

GCA_001306305.2 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.01

GCA_001306305.2 (MAGs)
MAGs: GCA_002706245.1_ASM270624v1_genomic.fna
Ecosystem: Ocean_(Global)