GCA_001305115.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Hydrogeniiclostridium mannosilyticum
Comparison to close relatives: Hominenteromicrobium mulieris
Comparison to close relatives: Caproiciproducens galactitolivorans
Comparison to close relatives: Clostridium jeddahense
Comparison to close relatives: Caproicibacter fermentans
Comparison to close relatives: Acutalibacter muris
Comparison to close relatives: Caproicibacterium amylolyticum
Comparison to close relatives: Hydrogeniiclostridium hominis
Comparison to close relatives: Thermocaproicibacter melissae
Comparison to close relatives: Caproicibacterium lactatifermentans
Comparison to close relatives: Solibaculum mannosilyticum
Comparison to close relatives: Clostridium sporosphaeroides
Comparison to close relatives: Clostridium methylpentosum
Comparison to close relatives: Clostridium leptum
Comparison to close relatives: Ethanoligenens harbinense
Comparison to close relatives: Ruthenibacterium lactatiformans
Comparison to close relatives: Massiliimalia timonensis
Comparison to close relatives: Tepidibaculum saccharolyticum
Comparison to close relatives: Massiliimalia massiliensis
Comparison to close relatives: Acetanaerobacterium elongatum
Comparison to close relatives: Huintestinicola butyrica
Comparison to close relatives: Butyricicoccus pullicaecorum
Comparison to close relatives: Anaerotruncus colihominis
Comparison to close relatives: Hydrogenoanaerobacterium saccharovorans
Comparison to close relatives: Agathobaculum butyriciproducens
Comparison to close relatives: Agathobaculum ammoniilyticum
Comparison to close relatives: Fournierella massiliensis
Comparison to close relatives: Clostridium facile
Comparison to close relatives: Clostridium cellulosi
Comparison to close relatives: Intestinimonas butyriciproducens
Comparison to close relatives: Butyricicoccus porcorum
Comparison to close relatives: Hominimerdicola aceti
Comparison to close relatives: Gemmiger gallinarum
Comparison to close relatives: Lawsonibacter asaccharolyticus
Comparison to close relatives: Anaerofilum hominis
Comparison to close relatives: Flavonifractor plautii
Comparison to close relatives: Intestinimonas massiliensis
Comparison to close relatives: Faecalibacterium duncaniae
Comparison to close relatives: Pseudoflavonifractor capillosus
Comparison to close relatives: Faecalibacterium hattorii
Comparison to close relatives: Sporobacter termitidis
Comparison to close relatives: Flintibacter muris
Comparison to close relatives: Pseudobacteroides cellulosolvens
Comparison to close relatives: Faecalibacterium prausnitzii
Comparison to close relatives: Eubacterium siraeum
Comparison to close relatives: Muriventricola aceti
Comparison to close relatives: Ruminiclostridium papyrosolvens
Comparison to close relatives: Oscillibacter acetigenes
Comparison to close relatives: Youxingia wuxianensis
Comparison to close relatives: Ligaoa zhengdingensis
Comparison to close relatives: Faecalispora jeddahensis
Comparison to close relatives: Faecalispora sporosphaeroides
Carbon source: starch
CAZyme: GH3
CAZyme: GH2
CAZyme: GH27
CAZyme: GH136
CAZyme: GH97
CAZyme: GH127
CAZyme: GH84
CAZyme: GH31
CAZyme: GH13
CAZyme: GH29
CAZyme: GH92
CAZyme: GH30
CAZyme: GH43
CAZyme: GH0
CAZyme: GH6
CAZyme: GH38
CAZyme: GH25
CAZyme: GH28
CAZyme: GH77
CAZyme: GH63
CAZyme: GH78
CAZyme: GH101
CAZyme: GH18

GCA_001305115.1 (CAZyme)
CAZyme: GH73
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: GH19
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: GH114
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: GH23
Occurance: 2

GCA_001305115.1 (CAZyme)
CAZyme: GT35
Occurance: 2

GCA_001305115.1 (CAZyme)
CAZyme: GT51
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: GT13
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: GT4
Occurance: 23

GCA_001305115.1 (CAZyme)
CAZyme: GT2
Occurance: 18

GCA_001305115.1 (CAZyme)
CAZyme: GT8
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: GT5
Occurance: 2

GCA_001305115.1 (CAZyme)
CAZyme: GT28
Occurance: 6

GCA_001305115.1 (CAZyme)
CAZyme: GT1
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: GT0
Occurance: 3

GCA_001305115.1 (CAZyme)
CAZyme: GT26
Occurance: 2

GCA_001305115.1 (CAZyme)
CAZyme: PL8
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: CE4
Occurance: 4

GCA_001305115.1 (CAZyme)
CAZyme: CE0
Occurance: 2

GCA_001305115.1 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: CE1
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: CBM32
Occurance: 4

GCA_001305115.1 (CAZyme)
CAZyme: CBM51
Occurance: 7

GCA_001305115.1 (CAZyme)
CAZyme: CBM71
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: CBM66
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: CBM35
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: CBM6
Occurance: 2

GCA_001305115.1 (CAZyme)
CAZyme: CBM50
Occurance: 16

GCA_001305115.1 (CAZyme)
CAZyme: CBM48
Occurance: 4

GCA_001305115.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_001305115.1 (CAZyme)
CAZyme: CBM5
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: CBM2
Occurance: 1

GCA_001305115.1 (CAZyme)
CAZyme: CBM12
Occurance: 1

GCA_001305115.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_001305115.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_001305115.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001305115.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001305115.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001305115.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001305115.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_001305115.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_001305115.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001305115.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001305115.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001305115.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_001305115.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001305115.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001305115.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_001305115.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCA_001305115.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_001305115.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001305115.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_001305115.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_001305115.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_001305115.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCA_001305115.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCA_001305115.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001305115.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_001305115.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_001305115.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001305115.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_001305115.1 (Pathway)
Pathway: Starch degradation
Metabolic module: MF0005

GCA_001305115.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_001305115.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_001305115.1 (Pathway)
Pathway: Fructose degradation
Metabolic module: MF0015

GCA_001305115.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_001305115.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001305115.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_001305115.1 (Pathway)
Pathway: Threonine degradation I
Metabolic module: MF0049

GCA_001305115.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_001305115.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_001305115.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCA_001305115.1 (Pathway)
Pathway: Pyruvate:formate lyase
Metabolic module: MF0074

GCA_001305115.1 (Pathway)
Pathway: Lactate consumption II
Metabolic module: MF0080

GCA_001305115.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_001305115.1 (Pathway)
Pathway: Ethanol production I
Metabolic module: MF0090

GCA_001305115.1 (Pathway)
Pathway: Lactate production
Metabolic module: MF0092

GCA_001305115.1 (Pathway)
Pathway: Propionate production II
Metabolic module: MF0094

GCA_001305115.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001305115.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 2.6
Relative abundance (%): 0.03

GCA_001305115.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 1.3
Relative abundance (%): 0.36

GCA_001305115.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 0.4
Relative abundance (%): 0

GCA_001305115.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_001305115.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 4.8
Relative abundance (%): 0.28

GCA_001305115.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 66.6
Relative abundance (%): 0.48

GCA_001305115.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_001305115.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001305115.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.01

GCA_001305115.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.01

GCA_001305115.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 2.9
Relative abundance (%): 0

GCA_001305115.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 13
Relative abundance (%): 0.01

GCA_001305115.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.01

GCA_001305115.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.01

GCA_001305115.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001305115.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.01

GCA_001305115.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_001305115.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 29.1
Relative abundance (%): 0.04

GCA_001305115.1 (MAGs)
MAGs: LiJ_2014__MH0370__bin_9.fa
Ecosystem: Human

GCA_001305115.1 (MAGs)
MAGs: ERR414356_bin.58.fna
Ecosystem: Human