GCA_001304215.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Methylococcus capsulatus
Comparison to close relatives: Ectothiorhodosinus mongolicus
Comparison to close relatives: Ectothiorhodospira magna
Comparison to close relatives: Methyloterricola oryzae
Comparison to close relatives: Acidithiobacillus albertensis
Comparison to close relatives: Spongiibacter tropicus
Comparison to close relatives: Acidithiobacillus thiooxidans
Comparison to close relatives: Methylogaea oryzae
Comparison to close relatives: Acidithiobacillus sulfuriphilus
Comparison to close relatives: Sulfurivermis fontis
Comparison to close relatives: Methylophaga lonarensis
Comparison to close relatives: Steroidobacter gossypii
Comparison to close relatives: Thioalbus denitrificans
Comparison to close relatives: Thiorhodospira sibirica
Comparison to close relatives: Sulfuricaulis limicola
Comparison to close relatives: Ectothiorhodospira haloalkaliphila
Comparison to close relatives: Pseudomonas cedrina subsp. fulgida
Comparison to close relatives: Steroidobacter agariperforans
Comparison to close relatives: Plasticicumulans lactativorans
Comparison to close relatives: Pseudomonas azadiae
Comparison to close relatives: Beggiatoa leptomitoformis
Comparison to close relatives: Pseudomonas azerbaijanoccidentalis
Comparison to close relatives: Pseudomonas lini
Comparison to close relatives: Pseudomonas fitomaticsae
Comparison to close relatives: Pseudomonas lurida
Comparison to close relatives: Arenicella chitinivorans
Comparison to close relatives: Pseudomonas maumuensis
Comparison to close relatives: Ectothiorhodospira lacustris
Comparison to close relatives: Ectothiorhodospira shaposhnikovii
Comparison to close relatives: Pseudomonas azerbaijanorientalis
Comparison to close relatives: Arenicella xantha
Comparison to close relatives: Acidihalobacter ferrooxydans
Comparison to close relatives: Pseudomonas tehranensis
Comparison to close relatives: Nitrosococcus oceani
Comparison to close relatives: Halopseudomonas xinjiangensis
Comparison to close relatives: Pseudomonas muyukensis
Comparison to close relatives: Halopseudomonas sabulinigri
Comparison to close relatives: Pseudomonas marvdashtae
Comparison to close relatives: Thioprofundum hispidum
Comparison to close relatives: Sulfurifustis variabilis
Comparison to close relatives: Pseudomonas glycinae
Comparison to close relatives: Sedimenticola hydrogenitrophicus
Comparison to close relatives: Pseudomonas laurylsulfatiphila
Comparison to close relatives: Methylococcus mesophilus
Comparison to close relatives: Beggiatoa alba
Comparison to close relatives: Acidiferrobacter thiooxydans
Comparison to close relatives: Pseudomonas asiatica
Comparison to close relatives: Methylococcus geothermalis
Comparison to close relatives: Immundisolibacter cernigliae
Comparison to close relatives: Inmirania thermothiophila
Comparison to close relatives: Acidithiobacillus concretivorus
Comparison to close relatives: Peristeroidobacter agariperforans
Comparison to close relatives: Pseudomonas cedrina
Carbon source: starch
CAZyme: GH94
CAZyme: GH13
CAZyme: GH6
CAZyme: GH23
CAZyme: GH20
CAZyme: GH57
CAZyme: GH154
CAZyme: GH19
CAZyme: GH77
CAZyme: GH0
CAZyme: GH102
CAZyme: GH3
CAZyme: GH1
CAZyme: GH103
CAZyme: GH43
CAZyme: GH24
CAZyme: GT84
CAZyme: GT13
CAZyme: GT51
CAZyme: GT35
CAZyme: GT83
CAZyme: GT4

GCA_001304215.1 (CAZyme)
CAZyme: GT2
Occurance: 20

GCA_001304215.1 (CAZyme)
CAZyme: GT5
Occurance: 2

GCA_001304215.1 (CAZyme)
CAZyme: GT20
Occurance: 2

GCA_001304215.1 (CAZyme)
CAZyme: GT1
Occurance: 2

GCA_001304215.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_001304215.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_001304215.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_001304215.1 (CAZyme)
CAZyme: GT9
Occurance: 3

GCA_001304215.1 (CAZyme)
CAZyme: GT0
Occurance: 1

GCA_001304215.1 (CAZyme)
CAZyme: PL12
Occurance: 1

GCA_001304215.1 (CAZyme)
CAZyme: CE4
Occurance: 3

GCA_001304215.1 (CAZyme)
CAZyme: CE11
Occurance: 6

GCA_001304215.1 (CAZyme)
CAZyme: CBM50
Occurance: 18

GCA_001304215.1 (CAZyme)
CAZyme: CBM41
Occurance: 3

GCA_001304215.1 (CAZyme)
CAZyme: CBM20
Occurance: 2

GCA_001304215.1 (CAZyme)
CAZyme: CBM2
Occurance: 4

GCA_001304215.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_001304215.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_001304215.1 (CAZyme)
CAZyme: CBM51
Occurance: 2

GCA_001304215.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_001304215.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_001304215.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001304215.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001304215.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001304215.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001304215.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001304215.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_001304215.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_001304215.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001304215.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001304215.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001304215.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_001304215.1 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_001304215.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_001304215.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001304215.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_001304215.1 (Pathway)
Pathway: Acylglycerol degradation
Metabolic module: M00098

GCA_001304215.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_001304215.1 (Pathway)
Pathway: Pantothenate biosynthesis, valine/L-aspartate => pantothenate
Metabolic module: M00119

GCA_001304215.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001304215.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_001304215.1 (Pathway)
Pathway: Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
Metabolic module: M00123

GCA_001304215.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001304215.1 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_001304215.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_001304215.1 (Pathway)
Pathway: Cytochrome bd ubiquinol oxidase
Metabolic module: M00153

GCA_001304215.1 (Pathway)
Pathway: Cytochrome c oxidase, cbb3-type
Metabolic module: M00156

GCA_001304215.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_001304215.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_001304215.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCA_001304215.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_001304215.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001304215.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_001304215.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_001304215.1 (Pathway)
Pathway: Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP
Metabolic module: M00572

GCA_001304215.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_001304215.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_001304215.1 (Pathway)
Pathway: Sulfide oxidation, sulfide => sulfur
Metabolic module: M00985

GCA_001304215.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_001304215.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001304215.1 (Pathway)
Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA
Metabolic module: M01036

GCA_001304215.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_001304215.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_001304215.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_001304215.1 (Pathway)
Pathway: Glycogen biosynthesis, glucose-1P => glycogen/starch
Metabolic module: M00854

GCA_001304215.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_001304215.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_001304215.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_001304215.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001304215.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_001304215.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_001304215.1 (Pathway)
Pathway: Siroheme biosynthesis, glutamyl-tRNA => siroheme
Metabolic module: M00846

GCA_001304215.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_001304215.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_001304215.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_001304215.1 (Pathway)
Pathway: Methionine degradation II
Metabolic module: MF0039

GCA_001304215.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_001304215.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001304215.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_001304215.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_001304215.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCA_001304215.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_001304215.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_001304215.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_001304215.1 (Pathway)
Pathway: Sulfate reduction (dissimilatory)
Metabolic module: MF0102

GCA_001304215.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001304215.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001304215.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001304215.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.01

GCA_001304215.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001304215.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.02

GCA_001304215.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001304215.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_001304215.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001304215.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.04

GCA_001304215.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001304215.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001304215.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_001304215.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.6
Relative abundance (%): 0.03

GCA_001304215.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.01

GCA_001304215.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001304215.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001304215.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001304215.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001304215.1 (MAGs)
MAGs: no MAG matches found