GCA_001190015.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Zeimonas sediminis
Comparison to close relatives: Albidiferax ferrireducens
Comparison to close relatives: Ramlibacter algicola
Comparison to close relatives: Zeimonas arvi
Comparison to close relatives: Paracandidimonas soli
Comparison to close relatives: Aquabacterium limnoticum
Comparison to close relatives: Caldimonas brevitalea
Comparison to close relatives: Methylibium rhizosphaerae
Comparison to close relatives: Caldimonas thermodepolymerans
Comparison to close relatives: Piscinibacter aquaticus
Comparison to close relatives: Xenophilus azovorans
Comparison to close relatives: Tepidimonas ignava
Comparison to close relatives: Aquabacterium soli
Comparison to close relatives: Herbaspirillum rhizosphaerae
Comparison to close relatives: Paenalcaligenes niemegkensis
Comparison to close relatives: Rubrivivax albus
Comparison to close relatives: Schlegelella koreensis
Comparison to close relatives: Thiomonas islandica
Comparison to close relatives: Ramlibacter albus
Comparison to close relatives: Nitrosospira multiformis
Comparison to close relatives: Ottowia massiliensis
Comparison to close relatives: Rhizobacter profundi
Comparison to close relatives: Ramlibacter rhizophilus
Comparison to close relatives: Azohydromonas australica
Comparison to close relatives: Piscinibacter defluvii
Comparison to close relatives: Aquabacterium commune
Comparison to close relatives: Massilia chloroacetimidivorans
Comparison to close relatives: Aquabacterium terrae
Comparison to close relatives: Piscinibacter caeni
Comparison to close relatives: Ramlibacter pallidus
Comparison to close relatives: Aquabacterium citratiphilum
Comparison to close relatives: Aquabacterium parvum
Comparison to close relatives: Rubrivivax pictus
Comparison to close relatives: Massilia agilis
Comparison to close relatives: Massilia oculi
Comparison to close relatives: Ramlibacter tataouinensis
Comparison to close relatives: Duganella albus
Comparison to close relatives: Pseudorhodoferax soli
Comparison to close relatives: Neopusillimonas aromaticivorans
Comparison to close relatives: Taylorella equigenitalis
Comparison to close relatives: Pusillimonas minor
Comparison to close relatives: Kerstersia similis
Comparison to close relatives: Kerstersia gyiorum
Comparison to close relatives: Massilia timonae
Comparison to close relatives: Piscinibacter gummiphilus
Comparison to close relatives: Caldimonas tepidiphila
Comparison to close relatives: Rhodocyclus gracilis
Comparison to close relatives: Tepidimonas sediminis
Comparison to close relatives: Ramlibacter humi
Comparison to close relatives: Azohydromonas sediminis
Comparison to close relatives: Rhodoferax ferrireducens
Comparison to close relatives: Duganella alba
Carbon source: starch
CAZyme: GH4
CAZyme: GH23
CAZyme: GH13
CAZyme: GH6
CAZyme: GH28
CAZyme: GH102
CAZyme: GH16
CAZyme: GH77
CAZyme: GH114
CAZyme: GH0
CAZyme: GH18
CAZyme: GT13
CAZyme: GT4
CAZyme: GT51
CAZyme: GT28
CAZyme: GT0
CAZyme: GT83
CAZyme: GT1
CAZyme: GT2
CAZyme: GT20
CAZyme: GT30
CAZyme: GT104
CAZyme: GT19

GCA_001190015.1 (CAZyme)
CAZyme: GT9
Occurance: 6

GCA_001190015.1 (CAZyme)
CAZyme: GT21
Occurance: 1

GCA_001190015.1 (CAZyme)
CAZyme: CE11
Occurance: 2

GCA_001190015.1 (CAZyme)
CAZyme: CE9
Occurance: 2

GCA_001190015.1 (CAZyme)
CAZyme: CE14
Occurance: 1

GCA_001190015.1 (CAZyme)
CAZyme: CBM20
Occurance: 2

GCA_001190015.1 (CAZyme)
CAZyme: CBM50
Occurance: 10

GCA_001190015.1 (CAZyme)
CAZyme: CBM13
Occurance: 3

GCA_001190015.1 (CAZyme)
CAZyme: CBM41
Occurance: 2

GCA_001190015.1 (CAZyme)
CAZyme: CBM48
Occurance: 3

GCA_001190015.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_001190015.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_001190015.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001190015.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_001190015.1 (Pathway)
Pathway: Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Metabolic module: M00008

GCA_001190015.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001190015.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001190015.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001190015.1 (Pathway)
Pathway: Glyoxylate cycle
Metabolic module: M00012

GCA_001190015.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_001190015.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001190015.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001190015.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001190015.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_001190015.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_001190015.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_001190015.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_001190015.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001190015.1 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_001190015.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_001190015.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001190015.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_001190015.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_001190015.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_001190015.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_001190015.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001190015.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_001190015.1 (Pathway)
Pathway: Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
Metabolic module: M00123

GCA_001190015.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001190015.1 (Pathway)
Pathway: NADH:quinone oxidoreductase, prokaryotes
Metabolic module: M00144

GCA_001190015.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_001190015.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_001190015.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_001190015.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001190015.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_001190015.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_001190015.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_001190015.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCA_001190015.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_001190015.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_001190015.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_001190015.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001190015.1 (Pathway)
Pathway: UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc
Metabolic module: M01009

GCA_001190015.1 (Pathway)
Pathway: GDP-6-deoxy-Tal biosynthesis, GDP-Man => GDP-6-deoxy-Tal
Metabolic module: M01019

GCA_001190015.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_001190015.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_001190015.1 (Pathway)
Pathway: Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
Metabolic module: M00896

GCA_001190015.1 (Pathway)
Pathway: Pentose phosphate pathway (Pentose phosphate cycle)
Metabolic module: M00004

GCA_001190015.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_001190015.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_001190015.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_001190015.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001190015.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_001190015.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_001190015.1 (Pathway)
Pathway: Tetrahydrofolate biosynthesis, GTP => THF
Metabolic module: M00126

GCA_001190015.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_001190015.1 (Pathway)
Pathway: Alanine degradation I
Metabolic module: MF0033

GCA_001190015.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_001190015.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_001190015.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001190015.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_001190015.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_001190015.1 (Pathway)
Pathway: Glyoxylate bypass
Metabolic module: MF0063

GCA_001190015.1 (Pathway)
Pathway: Entner-Doudoroff pathway
Metabolic module: MF0066

GCA_001190015.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_001190015.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_001190015.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_001190015.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_001190015.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_001190015.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 53.7
Relative abundance (%): 6.56

GCA_001190015.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 23.8
Relative abundance (%): 0.57

GCA_001190015.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 18.4
Relative abundance (%): 0.08

GCA_001190015.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 35.7
Relative abundance (%): 0.19

GCA_001190015.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 29.2
Relative abundance (%): 1.44

GCA_001190015.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 25.3
Relative abundance (%): 1.09

GCA_001190015.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 37.9
Relative abundance (%): 0.35

GCA_001190015.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 14.5
Relative abundance (%): 0.8

GCA_001190015.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 49.8
Relative abundance (%): 18.3

GCA_001190015.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 53.8
Relative abundance (%): 1.47

GCA_001190015.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 10.9
Relative abundance (%): 0.3

GCA_001190015.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 13.3
Relative abundance (%): 0.02

GCA_001190015.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 21.2
Relative abundance (%): 0.05

GCA_001190015.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 73.4
Relative abundance (%): 8.07

GCA_001190015.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 26.6
Relative abundance (%): 0.09

GCA_001190015.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 20.6
Relative abundance (%): 0.66

GCA_001190015.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 28.5
Relative abundance (%): 0.08

GCA_001190015.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 59.6
Relative abundance (%): 0.9

GCA_001190015.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 27.5
Relative abundance (%): 0.29

GCA_001190015.1 (MAGs)
MAGs: no MAG matches found