GCA_001189345.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Caballeronia temeraria
Comparison to close relatives: Caballeronia concitans
Comparison to close relatives: Caballeronia calidae
Comparison to close relatives: Caballeronia arvi
Comparison to close relatives: Caballeronia catudaia
Comparison to close relatives: Caballeronia hypogeia
Comparison to close relatives: Caballeronia turbans
Comparison to close relatives: Caballeronia zhejiangensis
Comparison to close relatives: Mycetohabitans rhizoxinica
Comparison to close relatives: Caballeronia peredens
Comparison to close relatives: Caballeronia ptereochthonis
Comparison to close relatives: Caballeronia insecticola
Comparison to close relatives: Caballeronia cordobensis
Comparison to close relatives: Caballeronia terrestris
Comparison to close relatives: Caballeronia glathei
Comparison to close relatives: Caballeronia glebae
Comparison to close relatives: Caballeronia pedi
Comparison to close relatives: Paraburkholderia phymatum
Comparison to close relatives: Mycetohabitans endofungorum
Comparison to close relatives: Trinickia terrae
Comparison to close relatives: Caballeronia grimmiae
Comparison to close relatives: Caballeronia fortuita
Comparison to close relatives: Caballeronia jiangsuensis
Comparison to close relatives: Burkholderia savannae
Comparison to close relatives: Burkholderia thailandensis
Comparison to close relatives: Burkholderia singularis
Comparison to close relatives: Burkholderia humptydooensis
Comparison to close relatives: Trinickia mobilis
Comparison to close relatives: Caballeronia arationis
Comparison to close relatives: Burkholderia mayonis
Comparison to close relatives: Trinickia fusca
Comparison to close relatives: Caballeronia telluris
Comparison to close relatives: Burkholderia pseudomallei
Comparison to close relatives: Burkholderia mallei
Comparison to close relatives: Burkholderia catarinensis
Comparison to close relatives: Chitinasiproducens palmae
Comparison to close relatives: Paraburkholderia elongata
Comparison to close relatives: Burkholderia arboris
Comparison to close relatives: Paraburkholderia saeva
Comparison to close relatives: Paraburkholderia ginsengiterrae
Comparison to close relatives: Burkholderia glumae
Comparison to close relatives: Trinickia diaoshuihuensis
Comparison to close relatives: Paraburkholderia haematera
Comparison to close relatives: Caballeronia mineralivorans
Comparison to close relatives: Paraburkholderia acidicola
Comparison to close relatives: Paraburkholderia aromaticivorans
Comparison to close relatives: Paraburkholderia nemoris
Comparison to close relatives: Paraburkholderia domus
Comparison to close relatives: Paraburkholderia agricolaris
Comparison to close relatives: Paraburkholderia franconis
Carbon source: starch
CAZyme: GH13
CAZyme: GH0
CAZyme: GH6
CAZyme: GH39
CAZyme: GH77
CAZyme: GH23
CAZyme: GH28
CAZyme: GH20
CAZyme: GH101
CAZyme: GH78
CAZyme: GH102
CAZyme: GH135
CAZyme: GH4
CAZyme: GH37
CAZyme: GH15
CAZyme: GH114
CAZyme: GH104
CAZyme: GH3
CAZyme: GT13
CAZyme: GT51
CAZyme: GT35
CAZyme: GT4
CAZyme: GT0
CAZyme: GT83
CAZyme: GT1

GCA_001189345.1 (CAZyme)
CAZyme: GT2
Occurance: 20

GCA_001189345.1 (CAZyme)
CAZyme: GT20
Occurance: 4

GCA_001189345.1 (CAZyme)
CAZyme: GT28
Occurance: 5

GCA_001189345.1 (CAZyme)
CAZyme: GT30
Occurance: 3

GCA_001189345.1 (CAZyme)
CAZyme: GT5
Occurance: 4

GCA_001189345.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_001189345.1 (CAZyme)
CAZyme: GT104
Occurance: 1

GCA_001189345.1 (CAZyme)
CAZyme: GT9
Occurance: 5

GCA_001189345.1 (CAZyme)
CAZyme: GT21
Occurance: 1

GCA_001189345.1 (CAZyme)
CAZyme: CE14
Occurance: 2

GCA_001189345.1 (CAZyme)
CAZyme: CE11
Occurance: 2

GCA_001189345.1 (CAZyme)
CAZyme: CE12
Occurance: 2

GCA_001189345.1 (CAZyme)
CAZyme: CBM48
Occurance: 5

GCA_001189345.1 (CAZyme)
CAZyme: CBM50
Occurance: 11

GCA_001189345.1 (CAZyme)
CAZyme: CBM13
Occurance: 4

GCA_001189345.1 (CAZyme)
CAZyme: CBM41
Occurance: 1

GCA_001189345.1 (CAZyme)
CAZyme: CBM20
Occurance: 1

GCA_001189345.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_001189345.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_001189345.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001189345.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_001189345.1 (Pathway)
Pathway: Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Metabolic module: M00008

GCA_001189345.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001189345.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001189345.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001189345.1 (Pathway)
Pathway: Glyoxylate cycle
Metabolic module: M00012

GCA_001189345.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001189345.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_001189345.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_001189345.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_001189345.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001189345.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001189345.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001189345.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_001189345.1 (Pathway)
Pathway: Tyrosine degradation, tyrosine => homogentisate
Metabolic module: M00044

GCA_001189345.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_001189345.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_001189345.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_001189345.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001189345.1 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_001189345.1 (Pathway)
Pathway: ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Metabolic module: M00064

GCA_001189345.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001189345.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_001189345.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_001189345.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_001189345.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_001189345.1 (Pathway)
Pathway: Pantothenate biosynthesis, valine/L-aspartate => pantothenate
Metabolic module: M00119

GCA_001189345.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001189345.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_001189345.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_001189345.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001189345.1 (Pathway)
Pathway: NADH:quinone oxidoreductase, prokaryotes
Metabolic module: M00144

GCA_001189345.1 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_001189345.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_001189345.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_001189345.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_001189345.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001189345.1 (Pathway)
Pathway: D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P
Metabolic module: M00552

GCA_001189345.1 (Pathway)
Pathway: Trehalose biosynthesis, D-glucose 1P => trehalose
Metabolic module: M00565

GCA_001189345.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_001189345.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_001189345.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_001189345.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_001189345.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_001189345.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_001189345.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCA_001189345.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_001189345.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_001189345.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001189345.1 (Pathway)
Pathway: UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc
Metabolic module: M01009

GCA_001189345.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_001189345.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_001189345.1 (Pathway)
Pathway: Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
Metabolic module: M00896

GCA_001189345.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_001189345.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_001189345.1 (Pathway)
Pathway: Pentose phosphate pathway (Pentose phosphate cycle)
Metabolic module: M00004

GCA_001189345.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_001189345.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_001189345.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_001189345.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => HPP => tyrosine
Metabolic module: M00025

GCA_001189345.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001189345.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_001189345.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_001189345.1 (Pathway)
Pathway: beta-Oxidation
Metabolic module: M00087

GCA_001189345.1 (Pathway)
Pathway: Trehalose degradation II
Metabolic module: MF0012

GCA_001189345.1 (Pathway)
Pathway: Alanine degradation I
Metabolic module: MF0033

GCA_001189345.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_001189345.1 (Pathway)
Pathway: Leucine degradation
Metabolic module: MF0037

GCA_001189345.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001189345.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_001189345.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_001189345.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_001189345.1 (Pathway)
Pathway: Glyoxylate bypass
Metabolic module: MF0063

GCA_001189345.1 (Pathway)
Pathway: Entner-Doudoroff pathway
Metabolic module: MF0066

GCA_001189345.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_001189345.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_001189345.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_001189345.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_001189345.1 (Pathway)
Pathway: Formate conversion
Metabolic module: MF0077

GCA_001189345.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_001189345.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_001189345.1 (Pathway)
Pathway: Lactate production
Metabolic module: MF0092

GCA_001189345.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_001189345.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.59

GCA_001189345.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.09

GCA_001189345.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001189345.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 2.1
Relative abundance (%): 0.01

GCA_001189345.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 18.8
Relative abundance (%): 22.1

GCA_001189345.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.01

GCA_001189345.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.13

GCA_001189345.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.12

GCA_001189345.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 9.5
Relative abundance (%): 1.85

GCA_001189345.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 17.2
Relative abundance (%): 0.21

GCA_001189345.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 4.3
Relative abundance (%): 0.54

GCA_001189345.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 1.4
Relative abundance (%): 0.35

GCA_001189345.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 1.2
Relative abundance (%): 0.03

GCA_001189345.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 27.8
Relative abundance (%): 0.35

GCA_001189345.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.16

GCA_001189345.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 2.3
Relative abundance (%): 0.18

GCA_001189345.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.01

GCA_001189345.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 4.3
Relative abundance (%): 0.62

GCA_001189345.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.12

GCA_001189345.1 (MAGs)
MAGs: no MAG matches found