GCA_001184205.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Desulfocarbo indianensis
Comparison to close relatives: Desulfarculus baarsii
Comparison to close relatives: Dethiosulfatarculus sandiegensis
Comparison to close relatives: Desulfolithobacter dissulfuricans
Comparison to close relatives: Syntrophotalea acetylenica
Comparison to close relatives: Dissulfuribacter thermophilus
Comparison to close relatives: Desulfonatronobacter acetoxydans
Comparison to close relatives: Desulfoferrobacter suflitae
Comparison to close relatives: Desulfatitalea tepidiphila
Comparison to close relatives: Desulfomonile limimaris
Comparison to close relatives: Desulfatibacillum aliphaticivorans
Comparison to close relatives: Geotalea uraniireducens
Comparison to close relatives: Desulfatibacillum alkenivorans
Comparison to close relatives: Syntrophobacter fumaroxidans
Comparison to close relatives: Desulfosudis oleivorans
Comparison to close relatives: Desulfosarcina alkanivorans
Comparison to close relatives: Desulfobacterium indolicum
Comparison to close relatives: Geobacter metallireducens
Comparison to close relatives: Desulforegula conservatrix
Comparison to close relatives: Desulfosalsimonas propionicica
Comparison to close relatives: Geobacter grbiciae
Comparison to close relatives: Desulfuromonas carbonis
Comparison to close relatives: Desulfacinum infernum
Comparison to close relatives: Geobacter benzoatilyticus
Comparison to close relatives: Syntrophotalea acetylenivorans
Comparison to close relatives: Geoalkalibacter subterraneus
Comparison to close relatives: Geoalkalibacter ferrihydriticus
Comparison to close relatives: Syntrophus aciditrophicus
Comparison to close relatives: Desulfosarcina cetonica
Comparison to close relatives: Syntrophobacterium sulfatireducens
Comparison to close relatives: Desulfovirga adipica
Comparison to close relatives: Desulfonema magnum
Comparison to close relatives: Desulfobotulus sapovorans
Comparison to close relatives: Desulfosarcina widdelii
Comparison to close relatives: Desulfosarcina ovata
Comparison to close relatives: Fundidesulfovibrio terrae
Comparison to close relatives: Geobacter pickeringii
Comparison to close relatives: Geoanaerobacter pelophilus
Comparison to close relatives: Geobacter soli
Comparison to close relatives: Geobacter sulfurreducens subsp. ethanolicus
Comparison to close relatives: Desulfatiferula olefinivorans
Comparison to close relatives: Geomobilimonas luticola
Comparison to close relatives: Desulfococcus multivorans
Comparison to close relatives: Oceanidesulfovibrio indonesiensis
Comparison to close relatives: Trichlorobacter lovleyi
Comparison to close relatives: Desulfuromonas michiganensis
Comparison to close relatives: Pelobacter propionicus
Comparison to close relatives: Geobacter thiogenes
Comparison to close relatives: Desulfonauticus autotrophicus
Comparison to close relatives: Desulfosarcina variabilis
Comparison to close relatives: Geobacter sulfurreducens
Comparison to close relatives: Trichlorobacter thiogenes
Carbon source: starch
CAZyme: GH13
CAZyme: GH6
CAZyme: GH57
CAZyme: GH19
CAZyme: GH28
CAZyme: GH23
CAZyme: GH109
CAZyme: GH101
CAZyme: GH77
CAZyme: GH130
CAZyme: GH99
CAZyme: GH0
CAZyme: GH102
CAZyme: GH1
CAZyme: GH3
CAZyme: GH26
CAZyme: GH103
CAZyme: GT13
CAZyme: GT35
CAZyme: GT2
CAZyme: GT4
CAZyme: GT51
CAZyme: GT83

GCA_001184205.1 (CAZyme)
CAZyme: GT22
Occurance: 1

GCA_001184205.1 (CAZyme)
CAZyme: GT9
Occurance: 6

GCA_001184205.1 (CAZyme)
CAZyme: GT0
Occurance: 6

GCA_001184205.1 (CAZyme)
CAZyme: GT5
Occurance: 3

GCA_001184205.1 (CAZyme)
CAZyme: GT28
Occurance: 5

GCA_001184205.1 (CAZyme)
CAZyme: GT26
Occurance: 1

GCA_001184205.1 (CAZyme)
CAZyme: GT81
Occurance: 4

GCA_001184205.1 (CAZyme)
CAZyme: GT30
Occurance: 2

GCA_001184205.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_001184205.1 (CAZyme)
CAZyme: GT55
Occurance: 1

GCA_001184205.1 (CAZyme)
CAZyme: PL12
Occurance: 2

GCA_001184205.1 (CAZyme)
CAZyme: PL0
Occurance: 2

GCA_001184205.1 (CAZyme)
CAZyme: CE9
Occurance: 2

GCA_001184205.1 (CAZyme)
CAZyme: CE6
Occurance: 1

GCA_001184205.1 (CAZyme)
CAZyme: CE11
Occurance: 14

GCA_001184205.1 (CAZyme)
CAZyme: CE14
Occurance: 1

GCA_001184205.1 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_001184205.1 (CAZyme)
CAZyme: CE0
Occurance: 1

GCA_001184205.1 (CAZyme)
CAZyme: CBM41
Occurance: 2

GCA_001184205.1 (CAZyme)
CAZyme: CBM50
Occurance: 18

GCA_001184205.1 (CAZyme)
CAZyme: CBM48
Occurance: 3

GCA_001184205.1 (CAZyme)
CAZyme: CBM20
Occurance: 1

GCA_001184205.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_001184205.1 (CAZyme)
CAZyme: CBM13
Occurance: 1

GCA_001184205.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_001184205.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_001184205.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_001184205.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_001184205.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001184205.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_001184205.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001184205.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001184205.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001184205.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001184205.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_001184205.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001184205.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001184205.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001184205.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_001184205.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_001184205.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_001184205.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_001184205.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001184205.1 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_001184205.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_001184205.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001184205.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_001184205.1 (Pathway)
Pathway: C5 isoprenoid biosynthesis, non-mevalonate pathway
Metabolic module: M00096

GCA_001184205.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_001184205.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_001184205.1 (Pathway)
Pathway: Pantothenate biosynthesis, valine/L-aspartate => pantothenate
Metabolic module: M00119

GCA_001184205.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001184205.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_001184205.1 (Pathway)
Pathway: Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
Metabolic module: M00123

GCA_001184205.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001184205.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_001184205.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCA_001184205.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, bacteria
Metabolic module: M00364

GCA_001184205.1 (Pathway)
Pathway: Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Metabolic module: M00527

GCA_001184205.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001184205.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_001184205.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_001184205.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_001184205.1 (Pathway)
Pathway: Heme biosynthesis, archaea, siroheme => heme
Metabolic module: M00847

GCA_001184205.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001184205.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_001184205.1 (Pathway)
Pathway: GDP-D-Rha4N biosynthesis, Fru-6P => GDP-D-Rha4N
Metabolic module: M01006

GCA_001184205.1 (Pathway)
Pathway: Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
Metabolic module: M00896

GCA_001184205.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_001184205.1 (Pathway)
Pathway: Glycogen biosynthesis, glucose-1P => glycogen/starch
Metabolic module: M00854

GCA_001184205.1 (Pathway)
Pathway: Pentose phosphate pathway (Pentose phosphate cycle)
Metabolic module: M00004

GCA_001184205.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_001184205.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_001184205.1 (Pathway)
Pathway: beta-Oxidation
Metabolic module: M00087

GCA_001184205.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_001184205.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_001184205.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_001184205.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001184205.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_001184205.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_001184205.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_001184205.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_001184205.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCA_001184205.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_001184205.1 (Pathway)
Pathway: Succinate conversion to propionate
Metabolic module: MF0084

GCA_001184205.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_001184205.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_001184205.1 (Pathway)
Pathway: Sulfate reduction (dissimilatory)
Metabolic module: MF0102

GCA_001184205.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.01

GCA_001184205.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.03

GCA_001184205.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.01

GCA_001184205.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 4.6
Relative abundance (%): 0.01

GCA_001184205.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001184205.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001184205.1 (MAGs)
MAGs: no MAG matches found