GCA_001179885.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Brucella grignonensis
Comparison to close relatives: Shinella zoogloeoides
Comparison to close relatives: Ensifer alkalisoli
Comparison to close relatives: Mesorhizobium norvegicum
Comparison to close relatives: Rhizobium beringeri
Comparison to close relatives: Rhizobium favelukesii
Comparison to close relatives: Rhizobium metallidurans
Comparison to close relatives: Rhizobium johnstonii
Comparison to close relatives: Rhizobium brockwellii
Comparison to close relatives: Rhizobium anhuiense
Comparison to close relatives: Rhizobium ruizarguesonis
Comparison to close relatives: Rhizobium laguerreae
Comparison to close relatives: Rhizobium leguminosarum
Comparison to close relatives: Ensifer canadensis
Comparison to close relatives: Mesorhizobium neociceri
Comparison to close relatives: Mesorhizobium loti
Comparison to close relatives: Neorhizobium tomejilense
Comparison to close relatives: Rhizobium lusitanum
Comparison to close relatives: Tistrella bauzanensis
Comparison to close relatives: Aminobacter aminovorans
Comparison to close relatives: Ferirhizobium litorale
Comparison to close relatives: Mesorhizobium tamadayense
Comparison to close relatives: Mesorhizobium chacoense
Comparison to close relatives: Ensifer arboris
Comparison to close relatives: Mesorhizobium tianshanense
Comparison to close relatives: Rhizobium pisi
Comparison to close relatives: Mesorhizobium alhagi
Comparison to close relatives: Aminobacter niigataensis
Comparison to close relatives: Endobacterium cereale
Comparison to close relatives: Bartonella apis
Comparison to close relatives: Rhizobium lentis
Comparison to close relatives: Shinella lacus
Comparison to close relatives: Mesorhizobium wenxiniae
Comparison to close relatives: Aminobacter aganoensis
Comparison to close relatives: Rhizobium etli
Comparison to close relatives: Rhizobium aethiopicum
Comparison to close relatives: Rhizobium dioscoreae
Comparison to close relatives: Rhizobium rhizogenes
Comparison to close relatives: Shinella yambaruensis
Comparison to close relatives: Oricola indica
Comparison to close relatives: Rhizobium phaseoli
Comparison to close relatives: Mesorhizobium jarvisii
Comparison to close relatives: Mesorhizobium comanense
Comparison to close relatives: Mesorhizobium muleiense
Comparison to close relatives: Ensifer meliloti
Comparison to close relatives: Rhizobium cellulosilyticum
Comparison to close relatives: Paenochrobactrum glaciei
Comparison to close relatives: Pararhizobium giardinii
Comparison to close relatives: Devosia psychrophila
Comparison to close relatives: Brucella oryzae
Comparison to close relatives: Rhizobium giardinii
Comparison to close relatives: Sinorhizobium meliloti
Comparison to close relatives: Sinorhizobium arboris
Comparison to close relatives: Sinorhizobium alkalisoli
CAZyme: GH28
CAZyme: GH73
CAZyme: GT13
CAZyme: GT51
CAZyme: GT4
CAZyme: GT32
CAZyme: GT1
CAZyme: GT28
CAZyme: GT2
CAZyme: GT61
CAZyme: GT9
CAZyme: GT17
CAZyme: GT41
CAZyme: GT26
CAZyme: PL0
CAZyme: CE11
CAZyme: CBM50
CAZyme: CBM32
CAZyme: CBM48
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate

GCA_001179885.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001179885.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001179885.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_001179885.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_001179885.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001179885.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_001179885.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001179885.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_001179885.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_001179885.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_001179885.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_001179885.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_001179885.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001179885.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_001179885.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_001179885.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.38

GCA_001179885.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001179885.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001179885.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 2.7
Relative abundance (%): 0.04

GCA_001179885.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 51.8
Relative abundance (%): 1.67

GCA_001179885.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_001179885.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.02

GCA_001179885.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 59.5
Relative abundance (%): 6.46

GCA_001179885.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.05

GCA_001179885.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.07

GCA_001179885.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.02

GCA_001179885.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.01

GCA_001179885.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 6.6
Relative abundance (%): 0.26

GCA_001179885.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 2.3
Relative abundance (%): 0.01

GCA_001179885.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 9.5
Relative abundance (%): 1.54

GCA_001179885.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.01

GCA_001179885.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.04

GCA_001179885.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.04

GCA_001179885.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.01

GCA_001179885.1 (MAGs)
MAGs: no MAG matches found