GCA_001045525.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Geothrix limicola
Comparison to close relatives: Geothrix alkalitolerans
Comparison to close relatives: Paenibacillus piri
Comparison to close relatives: Anaeromyxobacter paludicola
Comparison to close relatives: Geothrix terrae
Comparison to close relatives: Vulgatibacter incomptus
Comparison to close relatives: Thermolithobacter carboxydivorans
Comparison to close relatives: Desulfonatronum thiosulfatophilum
Comparison to close relatives: Paenibacillus anaericanus
Comparison to close relatives: Vicinamibacter silvestris
Comparison to close relatives: Syntrophus aciditrophicus
Comparison to close relatives: Desulfolithobacter dissulfuricans
Comparison to close relatives: Fundidesulfovibrio agrisoli
Comparison to close relatives: Acidihalobacter yilgarnensis
Comparison to close relatives: Desulfomicrobium apsheronum
Comparison to close relatives: Desulfonatronum zhilinae
Comparison to close relatives: Desulfomicrobium macestii
Comparison to close relatives: Desulfomicrobium norvegicum
Comparison to close relatives: Acidihalobacter aeolianus
Comparison to close relatives: Desulfonatronum alkalitolerans
Comparison to close relatives: Paenibacillus planticolens
Comparison to close relatives: Fundidesulfovibrio soli
Comparison to close relatives: Fontibacillus solani
Comparison to close relatives: Chitinispirillum alkaliphilum
Comparison to close relatives: Desulfurivibrio alkaliphilus
Comparison to close relatives: Paenibacillus gelatinilyticus
Comparison to close relatives: Desulfonatronum buryatense
Comparison to close relatives: Paenibacillus alvei
Comparison to close relatives: Desulfogranum mediterraneum
Comparison to close relatives: Paenibacillus alginolyticus
Comparison to close relatives: Pseudodesulfovibrio sediminis
Comparison to close relatives: Syntrophus buswellii
Comparison to close relatives: Desulfocapsa thiozymogenes
Comparison to close relatives: Syntrophus gentianae
Comparison to close relatives: Geothrix fuzhouensis
Comparison to close relatives: Paenibacillus polymyxa
Comparison to close relatives: Geothrix paludis
Comparison to close relatives: Paenibacillus selenii
Comparison to close relatives: Paenibacillus germinis
Comparison to close relatives: Paenibacillus phytorum
Comparison to close relatives: Paenibacillus frigoriresistens
Comparison to close relatives: Moorella thermoacetica
Comparison to close relatives: Desulfomicrobium baculatum
Comparison to close relatives: Paenibacillus hunanensis
Comparison to close relatives: Desulfoferrobacter suflitae
Comparison to close relatives: Methylococcus geothermalis
Comparison to close relatives: Syntrophorhabdus aromaticivorans
Comparison to close relatives: Desulfofustis glycolicus
Comparison to close relatives: Paenibacillus terrigena
Comparison to close relatives: Pseudodesulfovibrio piezophilus
Carbon source: starch
Carbon source: cellulose
CAZyme: GH13
CAZyme: GH65
CAZyme: GH8
CAZyme: GH6
CAZyme: GH94
CAZyme: GH81
CAZyme: GH9
CAZyme: GH57
CAZyme: GH23
CAZyme: GH0
CAZyme: GH31
CAZyme: GH119
CAZyme: GH19
CAZyme: GH108
CAZyme: GH5
CAZyme: GH28
CAZyme: GH15
CAZyme: GH20
CAZyme: GH16
CAZyme: GH24
CAZyme: GH73
CAZyme: GH77
CAZyme: GH130
CAZyme: GH1

GCA_001045525.1 (CAZyme)
CAZyme: GH18
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: GH109
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: GH43
Occurance: 2

GCA_001045525.1 (CAZyme)
CAZyme: GT2
Occurance: 50

GCA_001045525.1 (CAZyme)
CAZyme: GT13
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: GT35
Occurance: 2

GCA_001045525.1 (CAZyme)
CAZyme: GT51
Occurance: 3

GCA_001045525.1 (CAZyme)
CAZyme: GT4
Occurance: 50

GCA_001045525.1 (CAZyme)
CAZyme: GT22
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: GT5
Occurance: 3

GCA_001045525.1 (CAZyme)
CAZyme: GT30
Occurance: 4

GCA_001045525.1 (CAZyme)
CAZyme: GT26
Occurance: 5

GCA_001045525.1 (CAZyme)
CAZyme: GT28
Occurance: 5

GCA_001045525.1 (CAZyme)
CAZyme: GT21
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: GT0
Occurance: 8

GCA_001045525.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: GT64
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: PL12
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: PL14
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: PL0
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: PL9
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: CE11
Occurance: 4

GCA_001045525.1 (CAZyme)
CAZyme: CE4
Occurance: 3

GCA_001045525.1 (CAZyme)
CAZyme: CBM2
Occurance: 7

GCA_001045525.1 (CAZyme)
CAZyme: CBM50
Occurance: 14

GCA_001045525.1 (CAZyme)
CAZyme: CBM48
Occurance: 4

GCA_001045525.1 (CAZyme)
CAZyme: CBM5
Occurance: 14

GCA_001045525.1 (CAZyme)
CAZyme: CBM44
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_001045525.1 (CAZyme)
CAZyme: CBM41
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: CBM4
Occurance: 3

GCA_001045525.1 (CAZyme)
CAZyme: CBM16
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: CBM20
Occurance: 1

GCA_001045525.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_001045525.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_001045525.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001045525.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001045525.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001045525.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001045525.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001045525.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_001045525.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001045525.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001045525.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001045525.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_001045525.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_001045525.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_001045525.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_001045525.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001045525.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001045525.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_001045525.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_001045525.1 (Pathway)
Pathway: Pantothenate biosynthesis, valine/L-aspartate => pantothenate
Metabolic module: M00119

GCA_001045525.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001045525.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_001045525.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001045525.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), light
Metabolic module: M00169

GCA_001045525.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCA_001045525.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001045525.1 (Pathway)
Pathway: Trehalose biosynthesis, D-glucose 1P => trehalose
Metabolic module: M00565

GCA_001045525.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_001045525.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_001045525.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_001045525.1 (Pathway)
Pathway: Heme biosynthesis, archaea, siroheme => heme
Metabolic module: M00847

GCA_001045525.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_001045525.1 (Pathway)
Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA
Metabolic module: M00999

GCA_001045525.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001045525.1 (Pathway)
Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf
Metabolic module: M01004

GCA_001045525.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_001045525.1 (Pathway)
Pathway: GDP-D-Rha biosynthesis, GDP-Man => GDP-D-Rha
Metabolic module: M01018

GCA_001045525.1 (Pathway)
Pathway: UDP-ManNAc3NAcA biosynthesis, UDP-GlcNAc => UDP-ManNAc3NAcA
Metabolic module: M01035

GCA_001045525.1 (Pathway)
Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA
Metabolic module: M01036

GCA_001045525.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_001045525.1 (Pathway)
Pathway: Glycogen biosynthesis, glucose-1P => glycogen/starch
Metabolic module: M00854

GCA_001045525.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_001045525.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001045525.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_001045525.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_001045525.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_001045525.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001045525.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_001045525.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_001045525.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_001045525.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCA_001045525.1 (Pathway)
Pathway: Pyruvate:formate lyase
Metabolic module: MF0074

GCA_001045525.1 (Pathway)
Pathway: Ethanol production I
Metabolic module: MF0090

GCA_001045525.1 (Pathway)
Pathway: Lactate production
Metabolic module: MF0092

GCA_001045525.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.31

GCA_001045525.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001045525.1 (MAGs)
MAGs: no MAG matches found