GCA_001044195.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Methylococcus mesophilus
Comparison to close relatives: Kineobactrum sediminis
Comparison to close relatives: Methylocaldum szegediense
Comparison to close relatives: Methylococcus geothermalis
Comparison to close relatives: Pseudomonas marvdashtae
Comparison to close relatives: Pseudomonas zanjanensis
Comparison to close relatives: Pseudomonas balearica
Comparison to close relatives: Immundisolibacter cernigliae
Comparison to close relatives: Gilvimarinus polysaccharolyticus
Comparison to close relatives: Sedimenticola hydrogenitrophicus
Comparison to close relatives: Endothiovibrio diazotrophicus
Comparison to close relatives: Marichromatium purpuratum
Comparison to close relatives: Acidihalobacter aeolianus
Comparison to close relatives: Thiorhodococcus minor
Comparison to close relatives: Thiorhodospira sibirica
Comparison to close relatives: Methylococcus capsulatus
Comparison to close relatives: Methylicorpusculum oleiharenae
Comparison to close relatives: Spongiibacter tropicus
Comparison to close relatives: Allochromatium tepidum
Comparison to close relatives: Thiorhodovibrio winogradskyi
Comparison to close relatives: Thiorhodovibrio frisius
Comparison to close relatives: Thiorhodovibrio litoralis
Comparison to close relatives: Rhabdochromatium marinum
Comparison to close relatives: Halochromatium roseum
Comparison to close relatives: Thiocapsa rosea
Comparison to close relatives: Ectothiorhodospira lacustris
Comparison to close relatives: Luminiphilus syltensis
Comparison to close relatives: Halochromatium glycolicum
Comparison to close relatives: Marinimicrobium locisalis
Comparison to close relatives: Chromatocurvus halotolerans
Comparison to close relatives: Marichromatium bheemlicum
Comparison to close relatives: Porticoccus litoralis
Comparison to close relatives: Haliea salexigens
Comparison to close relatives: Phaeochromatium fluminis
Comparison to close relatives: Thiorhodococcus alkaliphilus
Comparison to close relatives: Thiocystis minor
Comparison to close relatives: Thiohalocapsa marina
Comparison to close relatives: Imhoffiella bheemlica
Comparison to close relatives: Thioflavicoccus mobilis
Comparison to close relatives: Marichromatium gracile
Comparison to close relatives: Thiorhodococcus kakinadensis
Comparison to close relatives: Parahaliea mediterranea
Comparison to close relatives: Thiorhodococcus fuscus
Comparison to close relatives: Marichromatium indicum
Comparison to close relatives: Thiohalocapsa halophila
Comparison to close relatives: Sedimenticola selenatireducens
Comparison to close relatives: Phaeobacterium nitratireducens
Comparison to close relatives: Marimicrobium arenosum
Comparison to close relatives: Imhoffiella purpurea
Comparison to close relatives: Allochromatium vinosum
Comparison to close relatives: Stutzerimonas balearica
Carbon source: starch
CAZyme: GH13
CAZyme: GH6
CAZyme: GH16
CAZyme: GH23
CAZyme: GH28
CAZyme: GH103
CAZyme: GH77
CAZyme: GH33
CAZyme: GH3
CAZyme: GH0
CAZyme: GH19
CAZyme: GH114
CAZyme: GT2
CAZyme: GT13
CAZyme: GT4
CAZyme: GT35
CAZyme: GT51
CAZyme: GT0
CAZyme: GT22
CAZyme: GT5
CAZyme: GT83
CAZyme: GT1
CAZyme: GT28
CAZyme: GT9

GCA_001044195.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_001044195.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_001044195.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_001044195.1 (CAZyme)
CAZyme: GT7
Occurance: 1

GCA_001044195.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_001044195.1 (CAZyme)
CAZyme: GT26
Occurance: 1

GCA_001044195.1 (CAZyme)
CAZyme: PL12
Occurance: 1

GCA_001044195.1 (CAZyme)
CAZyme: CE11
Occurance: 2

GCA_001044195.1 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_001044195.1 (CAZyme)
CAZyme: CBM50
Occurance: 10

GCA_001044195.1 (CAZyme)
CAZyme: CBM20
Occurance: 2

GCA_001044195.1 (CAZyme)
CAZyme: CBM48
Occurance: 2

GCA_001044195.1 (CAZyme)
CAZyme: CBM41
Occurance: 1

GCA_001044195.1 (CAZyme)
CAZyme: CBM13
Occurance: 4

GCA_001044195.1 (CAZyme)
CAZyme: CBM2
Occurance: 2

GCA_001044195.1 (CAZyme)
CAZyme: CBM6
Occurance: 7

GCA_001044195.1 (CAZyme)
CAZyme: CBM5
Occurance: 1

GCA_001044195.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_001044195.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001044195.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001044195.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001044195.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001044195.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001044195.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_001044195.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_001044195.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001044195.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001044195.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_001044195.1 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_001044195.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001044195.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_001044195.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_001044195.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001044195.1 (Pathway)
Pathway: Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
Metabolic module: M00123

GCA_001044195.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001044195.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), light
Metabolic module: M00169

GCA_001044195.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_001044195.1 (Pathway)
Pathway: Isoleucine biosynthesis, pyruvate => 2-oxobutanoate
Metabolic module: M00535

GCA_001044195.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001044195.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_001044195.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_001044195.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_001044195.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_001044195.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_001044195.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_001044195.1 (Pathway)
Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA
Metabolic module: M00999

GCA_001044195.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001044195.1 (Pathway)
Pathway: UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc
Metabolic module: M01009

GCA_001044195.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_001044195.1 (Pathway)
Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA
Metabolic module: M01036

GCA_001044195.1 (Pathway)
Pathway: GDP-D-Rha4N biosynthesis, Fru-6P => GDP-D-Rha4N
Metabolic module: M01006

GCA_001044195.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_001044195.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_001044195.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_001044195.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001044195.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_001044195.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_001044195.1 (Pathway)
Pathway: Siroheme biosynthesis, glutamyl-tRNA => siroheme
Metabolic module: M00846

GCA_001044195.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_001044195.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_001044195.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_001044195.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_001044195.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001044195.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_001044195.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_001044195.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_001044195.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_001044195.1 (Pathway)
Pathway: Sulfate reduction (dissimilatory)
Metabolic module: MF0102

GCA_001044195.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001044195.1 (MAGs)
MAGs: no MAG matches found