GCA_001028025.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Hoministercoradaptatus ammoniilyticus
Comparison to close relatives: Mediterraneibacter butyricigenes
Comparison to close relatives: Mediterraneibacter faecis
Comparison to close relatives: Anaerostipes hadrus
Comparison to close relatives: Dorea acetigenes
Comparison to close relatives: Faecalicatena absiana
Comparison to close relatives: Hominisplanchenecus faecis
Comparison to close relatives: Faecalicatena acetigenes
Comparison to close relatives: Faecalicatena orotica
Comparison to close relatives: Blautia hansenii
Comparison to close relatives: Faecalicatena fissicatena
Comparison to close relatives: Faecalicatena faecalis
Comparison to close relatives: Coprococcus comes
Comparison to close relatives: Eubacterium oxidoreducens
Comparison to close relatives: Enterocloster asparagiformis
Comparison to close relatives: Lacrimispora saccharolytica
Comparison to close relatives: Faecalicatena contorta
Comparison to close relatives: Dorea formicigenerans
Comparison to close relatives: Mediterraneibacter massiliensis
Comparison to close relatives: Dorea ammoniilytica
Comparison to close relatives: Clostridium indicum
Comparison to close relatives: Robinsoniella peoriensis
Comparison to close relatives: Laedolimicola ammoniilytica
Comparison to close relatives: Brotonthovivens ammoniilytica
Comparison to close relatives: Suonthocola fibrivorans
Comparison to close relatives: Hespellia stercorisuis
Comparison to close relatives: Lacrimispora amygdalina
Comparison to close relatives: Lacrimispora algidixylanolytica
Comparison to close relatives: Clostridium scindens
Comparison to close relatives: Anaerosacchariphilus polymeriproducens
Comparison to close relatives: Hungatella xylanolytica
Comparison to close relatives: Faecalimonas umbilicata
Comparison to close relatives: Roseburia amylophila
Comparison to close relatives: Blautia pseudococcoides
Comparison to close relatives: Muricomes intestini
Comparison to close relatives: Blautia parvula
Comparison to close relatives: Mediterraneibacter glycyrrhizinilyticus
Comparison to close relatives: Clostridium nexile
Comparison to close relatives: Claveliimonas bilis
Comparison to close relatives: Blautia hominis
Comparison to close relatives: Hespellia porcina
Comparison to close relatives: Diplocloster modestus
Comparison to close relatives: Roseburia hominis
Comparison to close relatives: Blautia coccoides
Comparison to close relatives: Blautia producta
Comparison to close relatives: Diplocloster agilis
Comparison to close relatives: Anaerostipes amylophilus
Comparison to close relatives: Clostridium methoxybenzovorans
Comparison to close relatives: Lacrimispora celerecrescens
Comparison to close relatives: Lacrimispora xylanolytica
Comparison to close relatives: Lacrimispora indolis
Comparison to close relatives: Lacrimispora xylanisolvens
Carbon source: cellobiose
Carbon source: sucrose
Carbon source: starch
CAZyme: GH4
CAZyme: GH73
CAZyme: GH95
CAZyme: GH13
CAZyme: GH3
CAZyme: GH106
CAZyme: GH38
CAZyme: GH98
CAZyme: GH78
CAZyme: GH2
CAZyme: GH6
CAZyme: GH116
CAZyme: GH39
CAZyme: GH31
CAZyme: GH65
CAZyme: GH36
CAZyme: GH112
CAZyme: GH151
CAZyme: GH42
CAZyme: GH28
CAZyme: GH18

GCA_001028025.1 (CAZyme)
CAZyme: GH127
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GH32
Occurance: 5

GCA_001028025.1 (CAZyme)
CAZyme: GH43
Occurance: 6

GCA_001028025.1 (CAZyme)
CAZyme: GH25
Occurance: 3

GCA_001028025.1 (CAZyme)
CAZyme: GH35
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GH77
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GH51
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GH140
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GH29
Occurance: 3

GCA_001028025.1 (CAZyme)
CAZyme: GH10
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GH101
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GH1
Occurance: 12

GCA_001028025.1 (CAZyme)
CAZyme: GH49
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GH105
Occurance: 9

GCA_001028025.1 (CAZyme)
CAZyme: GH0
Occurance: 4

GCA_001028025.1 (CAZyme)
CAZyme: GH23
Occurance: 4

GCA_001028025.1 (CAZyme)
CAZyme: GH16
Occurance: 4

GCA_001028025.1 (CAZyme)
CAZyme: GH159
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GH117
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GH19
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GT2
Occurance: 35

GCA_001028025.1 (CAZyme)
CAZyme: GT13
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GT51
Occurance: 2

GCA_001028025.1 (CAZyme)
CAZyme: GT35
Occurance: 2

GCA_001028025.1 (CAZyme)
CAZyme: GT4
Occurance: 31

GCA_001028025.1 (CAZyme)
CAZyme: GT22
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GT1
Occurance: 5

GCA_001028025.1 (CAZyme)
CAZyme: GT5
Occurance: 3

GCA_001028025.1 (CAZyme)
CAZyme: GT26
Occurance: 3

GCA_001028025.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: GT28
Occurance: 6

GCA_001028025.1 (CAZyme)
CAZyme: GT32
Occurance: 2

GCA_001028025.1 (CAZyme)
CAZyme: GT0
Occurance: 3

GCA_001028025.1 (CAZyme)
CAZyme: GT96
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: PL12
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: CE9
Occurance: 9

GCA_001028025.1 (CAZyme)
CAZyme: CE1
Occurance: 4

GCA_001028025.1 (CAZyme)
CAZyme: CE4
Occurance: 4

GCA_001028025.1 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: CBM51
Occurance: 2

GCA_001028025.1 (CAZyme)
CAZyme: CBM32
Occurance: 4

GCA_001028025.1 (CAZyme)
CAZyme: CBM5
Occurance: 3

GCA_001028025.1 (CAZyme)
CAZyme: CBM50
Occurance: 24

GCA_001028025.1 (CAZyme)
CAZyme: CBM13
Occurance: 4

GCA_001028025.1 (CAZyme)
CAZyme: CBM47
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: CBM48
Occurance: 4

GCA_001028025.1 (CAZyme)
CAZyme: CBM2
Occurance: 1

GCA_001028025.1 (CAZyme)
CAZyme: CBM34
Occurance: 2

GCA_001028025.1 (CAZyme)
CAZyme: CBM0
Occurance: 2

GCA_001028025.1 (CAZyme)
CAZyme: CBM20
Occurance: 1

GCA_001028025.1 (Pathway)
Pathway: Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate
Metabolic module: M00001

GCA_001028025.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_001028025.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_001028025.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001028025.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_001028025.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001028025.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001028025.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001028025.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001028025.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_001028025.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001028025.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001028025.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001028025.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_001028025.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001028025.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001028025.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_001028025.1 (Pathway)
Pathway: C5 isoprenoid biosynthesis, non-mevalonate pathway
Metabolic module: M00096

GCA_001028025.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_001028025.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001028025.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_001028025.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_001028025.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), light
Metabolic module: M00169

GCA_001028025.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCA_001028025.1 (Pathway)
Pathway: Formaldehyde assimilation, ribulose monophosphate pathway
Metabolic module: M00345

GCA_001028025.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_001028025.1 (Pathway)
Pathway: Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
Metabolic module: M00526

GCA_001028025.1 (Pathway)
Pathway: Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Metabolic module: M00527

GCA_001028025.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001028025.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_001028025.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_001028025.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_001028025.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_001028025.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCA_001028025.1 (Pathway)
Pathway: UDP-L-FucNAc biosynthesis, UDP-GlcNAc => UDP-L-FucNAc
Metabolic module: M00923

GCA_001028025.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001028025.1 (Pathway)
Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf
Metabolic module: M01004

GCA_001028025.1 (Pathway)
Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA
Metabolic module: M01036

GCA_001028025.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_001028025.1 (Pathway)
Pathway: Glycogen biosynthesis, glucose-1P => glycogen/starch
Metabolic module: M00854

GCA_001028025.1 (Pathway)
Pathway: Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a, c-diamide
Metabolic module: M00924

GCA_001028025.1 (Pathway)
Pathway: Pentose phosphate pathway (Pentose phosphate cycle)
Metabolic module: M00004

GCA_001028025.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_001028025.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_001028025.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_001028025.1 (Pathway)
Pathway: Histidine biosynthesis, PRPP => histidine
Metabolic module: M00026

GCA_001028025.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001028025.1 (Pathway)
Pathway: De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP
Metabolic module: M00051

GCA_001028025.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_001028025.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_001028025.1 (Pathway)
Pathway: C1-unit interconversion, prokaryotes
Metabolic module: M00140

GCA_001028025.1 (Pathway)
Pathway: Arabinoxylan degradation
Metabolic module: MF0001

GCA_001028025.1 (Pathway)
Pathway: Fructan degradation
Metabolic module: MF0002

GCA_001028025.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_001028025.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_001028025.1 (Pathway)
Pathway: Sucrose degradation I
Metabolic module: MF0010

GCA_001028025.1 (Pathway)
Pathway: Trehalose degradation II
Metabolic module: MF0012

GCA_001028025.1 (Pathway)
Pathway: Allose degradation
Metabolic module: MF0013

GCA_001028025.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_001028025.1 (Pathway)
Pathway: Rhamnose degradation
Metabolic module: MF0019

GCA_001028025.1 (Pathway)
Pathway: Ribose degradation
Metabolic module: MF0020

GCA_001028025.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_001028025.1 (Pathway)
Pathway: Aspartate degradation II
Metabolic module: MF0029

GCA_001028025.1 (Pathway)
Pathway: Glutamate degradation II
Metabolic module: MF0031

GCA_001028025.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_001028025.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_001028025.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001028025.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_001028025.1 (Pathway)
Pathway: Threonine degradation I
Metabolic module: MF0049

GCA_001028025.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_001028025.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_001028025.1 (Pathway)
Pathway: Glycerol degradation I
Metabolic module: MF0060

GCA_001028025.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_001028025.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_001028025.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCA_001028025.1 (Pathway)
Pathway: Pyruvate:formate lyase
Metabolic module: MF0074

GCA_001028025.1 (Pathway)
Pathway: Lactaldehyde degradation
Metabolic module: MF0078

GCA_001028025.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_001028025.1 (Pathway)
Pathway: Ethanol production I
Metabolic module: MF0090

GCA_001028025.1 (Pathway)
Pathway: Lactate production
Metabolic module: MF0092

GCA_001028025.1 (Pathway)
Pathway: Propionate production II
Metabolic module: MF0094

GCA_001028025.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.05

GCA_001028025.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 17.7
Relative abundance (%): 0.47

GCA_001028025.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 1.8
Relative abundance (%): 0.1

GCA_001028025.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 3
Relative abundance (%): 0.01

GCA_001028025.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.06

GCA_001028025.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 45.1
Relative abundance (%): 0.3

GCA_001028025.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 3
Relative abundance (%): 0.4

GCA_001028025.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.01

GCA_001028025.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.01

GCA_001028025.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 1.2
Relative abundance (%): 0.09

GCA_001028025.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.02

GCA_001028025.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 8.5
Relative abundance (%): 0.01

GCA_001028025.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 12.5
Relative abundance (%): 0.04

GCA_001028025.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.5
Relative abundance (%): 0

GCA_001028025.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.6
Relative abundance (%): 0.01

GCA_001028025.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_001028025.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 20.8
Relative abundance (%): 0.75

GCA_001028025.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 1.4
Relative abundance (%): 0.04

GCA_001028025.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 34.6
Relative abundance (%): 0.26

GCA_001028025.1 (MAGs)
MAGs: no MAG matches found