GCA_001025035.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Rhabdothermincola sediminis
Comparison to close relatives: Actinomarinicola tropica
Comparison to close relatives: Acidiferrimicrobium australe
Comparison to close relatives: Aquihabitans daechungensis
Comparison to close relatives: Aciditerrimonas ferrireducens
Comparison to close relatives: Iamia majanohamensis
Comparison to close relatives: Geodermatophilus saharensis
Comparison to close relatives: Geodermatophilus nigrescens
Comparison to close relatives: Geodermatophilus arenarius
Comparison to close relatives: Frankia irregularis
Comparison to close relatives: Blastococcus saxobsidens
Comparison to close relatives: Geodermatophilus daqingensis
Comparison to close relatives: Geodermatophilus poikilotrophus
Comparison to close relatives: Geodermatophilus africanus
Comparison to close relatives: Geodermatophilus amargosae
Comparison to close relatives: Blastococcus carthaginiensis
Comparison to close relatives: Klenkia marina
Comparison to close relatives: Micromonospora tarapacensis
Comparison to close relatives: Geodermatophilus tzadiensis
Comparison to close relatives: Klenkia brasiliensis
Comparison to close relatives: Modestobacter caceresii
Comparison to close relatives: Blastococcus atacamensis
Comparison to close relatives: Egibacter rhizosphaerae
Comparison to close relatives: Frankia gtarii
Comparison to close relatives: Frankia tisai
Comparison to close relatives: Frankia coriariae
Comparison to close relatives: Modestobacter italicus
Comparison to close relatives: Frankia asymbiotica
Comparison to close relatives: Modestobacter excelsi
Comparison to close relatives: Modestobacter altitudinis
Comparison to close relatives: Actinocatenispora comari
Comparison to close relatives: Frankia alni
Comparison to close relatives: Actinoplanes utahensis
Comparison to close relatives: Actinoplanes missouriensis
Comparison to close relatives: Cellulosimicrobium fucosivorans
Comparison to close relatives: Micromonospora pelagivivens
Comparison to close relatives: Micromonospora sonchi
Comparison to close relatives: Asanoa ferruginea
Comparison to close relatives: Modestobacter lacusdianchii
Comparison to close relatives: Nakamurella multipartita
Comparison to close relatives: Asanoa ishikariensis
Comparison to close relatives: Kribbella flavida
Comparison to close relatives: Micromonospora endophytica
Comparison to close relatives: Actinomadura graeca
Comparison to close relatives: Plantactinospora solaniradicis
Comparison to close relatives: Actinoplanes friuliensis
Comparison to close relatives: Nucisporomicrobium flavum
Comparison to close relatives: Micromonospora phaseoli
Comparison to close relatives: Micromonospora polyrhachis
Comparison to close relatives: Jidongwangia harbinensis
Comparison to close relatives: Petropleomorpha daqingensis
Comparison to close relatives: Pseudofrankia asymbiotica
Comparison to close relatives: Cellulosimicrobium composti
Comparison to close relatives: Amorphoplanes friuliensis
Comparison to close relatives: Parafrankia irregularis
Comparison to close relatives: Protofrankia coriariae
Carbon source: starch
CAZyme: GH13
CAZyme: GH2
CAZyme: GH64
CAZyme: GH16
CAZyme: GH38
CAZyme: GH6
CAZyme: GH3
CAZyme: GH43
CAZyme: GH0
CAZyme: GH28
CAZyme: GH18
CAZyme: GH77
CAZyme: GH20
CAZyme: GH36
CAZyme: GH5
CAZyme: GH101
CAZyme: GH1
CAZyme: GH29
CAZyme: GH32

GCA_001025035.1 (CAZyme)
CAZyme: GH23
Occurance: 2

GCA_001025035.1 (CAZyme)
CAZyme: GH4
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: GH71
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: GH33
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: GH63
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: GH135
Occurance: 2

GCA_001025035.1 (CAZyme)
CAZyme: GH19
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: GT2
Occurance: 41

GCA_001025035.1 (CAZyme)
CAZyme: GT4
Occurance: 44

GCA_001025035.1 (CAZyme)
CAZyme: GT35
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: GT0
Occurance: 4

GCA_001025035.1 (CAZyme)
CAZyme: GT51
Occurance: 3

GCA_001025035.1 (CAZyme)
CAZyme: GT89
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: GT1
Occurance: 9

GCA_001025035.1 (CAZyme)
CAZyme: GT26
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: GT28
Occurance: 5

GCA_001025035.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: GT94
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: GT81
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: CE6
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: CE1
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: CE14
Occurance: 3

GCA_001025035.1 (CAZyme)
CAZyme: CE0
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: CBM5
Occurance: 6

GCA_001025035.1 (CAZyme)
CAZyme: CBM12
Occurance: 2

GCA_001025035.1 (CAZyme)
CAZyme: CBM56
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: CBM50
Occurance: 6

GCA_001025035.1 (CAZyme)
CAZyme: CBM41
Occurance: 2

GCA_001025035.1 (CAZyme)
CAZyme: CBM51
Occurance: 2

GCA_001025035.1 (CAZyme)
CAZyme: CBM2
Occurance: 5

GCA_001025035.1 (CAZyme)
CAZyme: CBM48
Occurance: 5

GCA_001025035.1 (CAZyme)
CAZyme: CBM38
Occurance: 1

GCA_001025035.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_001025035.1 (CAZyme)
CAZyme: CBM32
Occurance: 3

GCA_001025035.1 (CAZyme)
CAZyme: CBM42
Occurance: 2

GCA_001025035.1 (Pathway)
Pathway: Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate
Metabolic module: M00001

GCA_001025035.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_001025035.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_001025035.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001025035.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_001025035.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001025035.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001025035.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001025035.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001025035.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_001025035.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_001025035.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_001025035.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001025035.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001025035.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001025035.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_001025035.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_001025035.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001025035.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_001025035.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001025035.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_001025035.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_001025035.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001025035.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_001025035.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001025035.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_001025035.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, bacteria
Metabolic module: M00364

GCA_001025035.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, archaea
Metabolic module: M00365

GCA_001025035.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001025035.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_001025035.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_001025035.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_001025035.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_001025035.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCA_001025035.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_001025035.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001025035.1 (Pathway)
Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf
Metabolic module: M01004

GCA_001025035.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_001025035.1 (Pathway)
Pathway: GDP-D-Rha biosynthesis, GDP-Man => GDP-D-Rha
Metabolic module: M01018

GCA_001025035.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_001025035.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_001025035.1 (Pathway)
Pathway: Pentose phosphate pathway (Pentose phosphate cycle)
Metabolic module: M00004

GCA_001025035.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_001025035.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_001025035.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_001025035.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001025035.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_001025035.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_001025035.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_001025035.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_001025035.1 (Pathway)
Pathway: Glutamate degradation II
Metabolic module: MF0031

GCA_001025035.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_001025035.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_001025035.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_001025035.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001025035.1 (Pathway)
Pathway: Glycerol degradation II
Metabolic module: MF0061

GCA_001025035.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_001025035.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_001025035.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_001025035.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_001025035.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_001025035.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 1.7
Relative abundance (%): 0.08

GCA_001025035.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001025035.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001025035.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 22.2
Relative abundance (%): 0.03

GCA_001025035.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 1.8
Relative abundance (%): 0.07

GCA_001025035.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.04

GCA_001025035.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001025035.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 1.5
Relative abundance (%): 0.01

GCA_001025035.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 9.4
Relative abundance (%): 0.01

GCA_001025035.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 15.7
Relative abundance (%): 0.01

GCA_001025035.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001025035.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 33.2
Relative abundance (%): 0.05

GCA_001025035.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 25.1
Relative abundance (%): 0.02

GCA_001025035.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 39.2
Relative abundance (%): 0.01

GCA_001025035.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 2.4
Relative abundance (%): 0.02

GCA_001025035.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001025035.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.5
Relative abundance (%): 0

GCA_001025035.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 1.2
Relative abundance (%): 0.02

GCA_001025035.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001025035.1 (MAGs)
MAGs: no MAG matches found