GCA_001023575.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Aciditerrimonas ferrireducens
Comparison to close relatives: Acidimicrobium ferrooxidans
Comparison to close relatives: Rhabdothermincola sediminis
Comparison to close relatives: Actinomarinicola tropica
Comparison to close relatives: Frankia coriariae
Comparison to close relatives: Frankia gtarii
Comparison to close relatives: Frankia tisai
Comparison to close relatives: Frankia alni
Comparison to close relatives: Egibacter rhizosphaerae
Comparison to close relatives: Frankia casuarinae
Comparison to close relatives: Frankia irregularis
Comparison to close relatives: Iamia majanohamensis
Comparison to close relatives: Frankia inefficax
Comparison to close relatives: Ferrimicrobium acidiphilum
Comparison to close relatives: Frankia asymbiotica
Comparison to close relatives: Luedemannella helvata
Comparison to close relatives: Luedemannella flava
Comparison to close relatives: Actinoplanes missouriensis
Comparison to close relatives: Dactylosporangium solaniradicis
Comparison to close relatives: Frankia canadensis
Comparison to close relatives: Trebonia kvetii
Comparison to close relatives: Micromonospora narathiwatensis
Comparison to close relatives: Klenkia brasiliensis
Comparison to close relatives: Micromonospora fluminis
Comparison to close relatives: Micromonospora soli
Comparison to close relatives: Micromonospora thawaii
Comparison to close relatives: Rhabdothermincola salaria
Comparison to close relatives: Nakamurella multipartita
Comparison to close relatives: Klenkia marina
Comparison to close relatives: Catellatospora citrea subsp. citrea
Comparison to close relatives: Nakamurella alba
Comparison to close relatives: Saccharothrix coeruleofusca
Comparison to close relatives: Cryptosporangium eucalypti
Comparison to close relatives: Blastococcus saxobsidens
Comparison to close relatives: Geodermatophilus daqingensis
Comparison to close relatives: Micromonospora solifontis
Comparison to close relatives: Micromonospora polyrhachis
Comparison to close relatives: Catellatospora coxensis
Comparison to close relatives: Micromonospora tarapacensis
Comparison to close relatives: Micromonospora pelagivivens
Comparison to close relatives: Catellatospora tagetis
Comparison to close relatives: Micromonospora chersina
Comparison to close relatives: Micromonospora rhizosphaerae
Comparison to close relatives: Catellatospora paridis
Comparison to close relatives: Micromonospora pattaloongensis
Comparison to close relatives: Micromonospora rubida
Comparison to close relatives: Phytohabitans kaempferiae
Comparison to close relatives: Micromonospora coriariae
Comparison to close relatives: Phytohabitans aurantiacus
Comparison to close relatives: Modestobacter caceresii
Comparison to close relatives: Catellatospora citrea
Comparison to close relatives: Petropleomorpha daqingensis
Comparison to close relatives: Pseudofrankia asymbiotica
Comparison to close relatives: Parafrankia irregularis
Comparison to close relatives: Pseudofrankia inefficax
Comparison to close relatives: Protofrankia coriariae
CAZyme: GH13
CAZyme: GH43
CAZyme: GH2
CAZyme: GH38
CAZyme: GH39
CAZyme: GH6
CAZyme: GH73
CAZyme: GH33
CAZyme: GH65
CAZyme: GH3
CAZyme: GH28
CAZyme: GH16
CAZyme: GH36
CAZyme: GH20
CAZyme: GH23
CAZyme: GH101
CAZyme: GH10
CAZyme: GH29
CAZyme: GH1
CAZyme: GH135

GCA_001023575.1 (CAZyme)
CAZyme: GH0
Occurance: 5

GCA_001023575.1 (CAZyme)
CAZyme: GH5
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: GH19
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: GH130
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: GT2
Occurance: 24

GCA_001023575.1 (CAZyme)
CAZyme: GT51
Occurance: 2

GCA_001023575.1 (CAZyme)
CAZyme: GT4
Occurance: 28

GCA_001023575.1 (CAZyme)
CAZyme: GT1
Occurance: 8

GCA_001023575.1 (CAZyme)
CAZyme: GT28
Occurance: 5

GCA_001023575.1 (CAZyme)
CAZyme: GT0
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: GT81
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: GT26
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: CE6
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: CE1
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: CE14
Occurance: 5

GCA_001023575.1 (CAZyme)
CAZyme: CE0
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: CBM50
Occurance: 7

GCA_001023575.1 (CAZyme)
CAZyme: CBM38
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_001023575.1 (CAZyme)
CAZyme: CBM2
Occurance: 4

GCA_001023575.1 (CAZyme)
CAZyme: CBM41
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: CBM48
Occurance: 3

GCA_001023575.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_001023575.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_001023575.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_001023575.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_001023575.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_001023575.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_001023575.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_001023575.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_001023575.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_001023575.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_001023575.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_001023575.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_001023575.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_001023575.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_001023575.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_001023575.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_001023575.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_001023575.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_001023575.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_001023575.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_001023575.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_001023575.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_001023575.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_001023575.1 (Pathway)
Pathway: UDP-Gal biosynthesis, Gal => UDP-Gal
Metabolic module: M00554

GCA_001023575.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_001023575.1 (Pathway)
Pathway: Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
Metabolic module: M00632

GCA_001023575.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_001023575.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCA_001023575.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_001023575.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_001023575.1 (Pathway)
Pathway: GDP-D-Rha biosynthesis, GDP-Man => GDP-D-Rha
Metabolic module: M01018

GCA_001023575.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_001023575.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_001023575.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_001023575.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_001023575.1 (Pathway)
Pathway: Siroheme biosynthesis, glutamyl-tRNA => siroheme
Metabolic module: M00846

GCA_001023575.1 (Pathway)
Pathway: Arabinoxylan degradation
Metabolic module: MF0001

GCA_001023575.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_001023575.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_001023575.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_001023575.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_001023575.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_001023575.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_001023575.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_001023575.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_001023575.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_001023575.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_001023575.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_001023575.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001023575.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001023575.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001023575.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 14
Relative abundance (%): 0.08

GCA_001023575.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001023575.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001023575.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001023575.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.05

GCA_001023575.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001023575.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.04

GCA_001023575.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001023575.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 1.1
Relative abundance (%): 0

GCA_001023575.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.02

GCA_001023575.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_001023575.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.01

GCA_001023575.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001023575.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001023575.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_001023575.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_001023575.1 (MAGs)
MAGs: no MAG matches found