GCA_000385055.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Thalassolituus oleivorans
Comparison to close relatives: Pseudohongiella nitratireducens
Comparison to close relatives: Amphritea pacifica
Comparison to close relatives: Pseudomonas lactis
Comparison to close relatives: Pseudomonas paralactis
Comparison to close relatives: Neptunomonas qingdaonensis
Comparison to close relatives: Marinomonas aquimarina
Comparison to close relatives: Neptuniibacter caesariensis
Comparison to close relatives: Neptunomonas acidivorans
Comparison to close relatives: Marinobacterium aestuarii
Comparison to close relatives: Ectothiorhodospira lacustris
Comparison to close relatives: Marinomonas ostreistagni
Comparison to close relatives: Motiliproteus coralliicola
Comparison to close relatives: Bermanella marisrubri
Comparison to close relatives: Marinomonas posidonica
Comparison to close relatives: Halioglobus japonicus
Comparison to close relatives: Marinimicrobium haloxylanilyticum
Comparison to close relatives: Amphritea opalescens
Comparison to close relatives: Halopseudomonas salegens
Comparison to close relatives: Marinomonas piezotolerans
Comparison to close relatives: Saccharophagus degradans
Comparison to close relatives: Thalassolituus hydrocarboniclasticus
Comparison to close relatives: Pseudomonas libanensis
Comparison to close relatives: Pseudomonas cedrina subsp. fulgida
Comparison to close relatives: Spartinivicinus marinus
Comparison to close relatives: Arenicella xantha
Comparison to close relatives: Pseudomonas synxantha
Comparison to close relatives: Alkalimarinus coralli
Comparison to close relatives: Pseudomonas azadiae
Comparison to close relatives: Litorivivens lipolytica
Comparison to close relatives: Pseudomonas pergaminensis
Comparison to close relatives: Pseudomonas khavaziana
Comparison to close relatives: Pseudomonas salmasensis
Comparison to close relatives: Pseudomonas shahriarae
Comparison to close relatives: Marimicrobium arenosum
Comparison to close relatives: Aestuariirhabdus haliotis
Comparison to close relatives: Marinomonas blandensis
Comparison to close relatives: Microbulbifer guangxiensis
Comparison to close relatives: Halopseudomonas bauzanensis
Comparison to close relatives: Haliea salexigens
Comparison to close relatives: Alkalimarinus alittae
Comparison to close relatives: Halopseudomonas sabulinigri
Comparison to close relatives: Alkalimarinus sediminis
Comparison to close relatives: Microbulbifer flavimaris
Comparison to close relatives: Neptuniibacter victor
Comparison to close relatives: Microbulbifer zhoushanensis
Comparison to close relatives: Thiorhodospira sibirica
Comparison to close relatives: Venatoribacter cucullus
Comparison to close relatives: Spongiibacter tropicus
Comparison to close relatives: Kineobactrum sediminis
Comparison to close relatives: Pseudomonas cedrina
CAZyme: GH149
CAZyme: GH13
CAZyme: GH3
CAZyme: GH6
CAZyme: GH65
CAZyme: GH28
CAZyme: GH154
CAZyme: GH23
CAZyme: GH17
CAZyme: GH2
CAZyme: GH16
CAZyme: GH35
CAZyme: GH19
CAZyme: GH0
CAZyme: GH103
CAZyme: GH73
CAZyme: GT51
CAZyme: GT13
CAZyme: GT25
CAZyme: GT90
CAZyme: GT2
CAZyme: GT4
CAZyme: GT1
CAZyme: GT28
CAZyme: GT30

GCA_000385055.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_000385055.1 (CAZyme)
CAZyme: GT0
Occurance: 2

GCA_000385055.1 (CAZyme)
CAZyme: PL6
Occurance: 1

GCA_000385055.1 (CAZyme)
CAZyme: PL17
Occurance: 1

GCA_000385055.1 (CAZyme)
CAZyme: CE6
Occurance: 1

GCA_000385055.1 (CAZyme)
CAZyme: CE0
Occurance: 1

GCA_000385055.1 (CAZyme)
CAZyme: CE1
Occurance: 1

GCA_000385055.1 (CAZyme)
CAZyme: CE11
Occurance: 1

GCA_000385055.1 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_000385055.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_000385055.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_000385055.1 (CAZyme)
CAZyme: CBM50
Occurance: 5

GCA_000385055.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_000385055.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_000385055.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000385055.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000385055.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000385055.1 (Pathway)
Pathway: Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Metabolic module: M00008

GCA_000385055.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000385055.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000385055.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000385055.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000385055.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000385055.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000385055.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000385055.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000385055.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000385055.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000385055.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000385055.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000385055.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000385055.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000385055.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000385055.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000385055.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000385055.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000385055.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000385055.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000385055.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000385055.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000385055.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000385055.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000385055.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000385055.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000385055.1 (Pathway)
Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA
Metabolic module: M01036

GCA_000385055.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000385055.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000385055.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000385055.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000385055.1 (Pathway)
Pathway: C1-unit interconversion, prokaryotes
Metabolic module: M00140

GCA_000385055.1 (Pathway)
Pathway: Alanine degradation I
Metabolic module: MF0033

GCA_000385055.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000385055.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000385055.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000385055.1 (Pathway)
Pathway: Entner-Doudoroff pathway
Metabolic module: MF0066

GCA_000385055.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000385055.1 (Pathway)
Pathway: Formate conversion
Metabolic module: MF0077

GCA_000385055.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.01

GCA_000385055.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_000385055.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000385055.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 2
Relative abundance (%): 0.02

GCA_000385055.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 40.2
Relative abundance (%): 1.02

GCA_000385055.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000385055.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 1
Relative abundance (%): 0.02

GCA_000385055.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 45.8
Relative abundance (%): 1.27

GCA_000385055.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.05

GCA_000385055.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.8
Relative abundance (%): 0

GCA_000385055.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000385055.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 1
Relative abundance (%): 0.04

GCA_000385055.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 2.1
Relative abundance (%): 0.02

GCA_000385055.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 1.5
Relative abundance (%): 0.01

GCA_000385055.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 4.6
Relative abundance (%): 0.16

GCA_000385055.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000385055.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000385055.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000385055.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000385055.1 (MAGs)
MAGs: no MAG matches found