GCA_000378905.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Rathayibacter tritici
Comparison to close relatives: Rathayibacter rathayi
Comparison to close relatives: Marisediminicola antarctica
Comparison to close relatives: Cellulomonas rhizosphaerae
Comparison to close relatives: Cryobacterium tepidiphilum
Comparison to close relatives: Actinotalea fermentans
Comparison to close relatives: Cellulomonas wangsupingiae
Comparison to close relatives: Planctomonas deserti
Comparison to close relatives: Ornithinicoccus halotolerans
Comparison to close relatives: Cryobacterium psychrophilum
Comparison to close relatives: Amnibacterium flavum
Comparison to close relatives: Rathayibacter oskolensis
Comparison to close relatives: Cryobacterium soli
Comparison to close relatives: Cellulomonas chengniuliangii
Comparison to close relatives: Cryobacterium zongtaii
Comparison to close relatives: Frigoribacterium endophyticum
Comparison to close relatives: Glaciihabitans arcticus
Comparison to close relatives: Labedella phragmitis
Comparison to close relatives: Lysinibacter cavernae
Comparison to close relatives: Cellulomonas bogoriensis
Comparison to close relatives: Microcella alkalica
Comparison to close relatives: Mycetocola spongiae
Comparison to close relatives: Kineosphaera limosa
Comparison to close relatives: Clavibacter michiganensis subsp. michiganensis
Comparison to close relatives: Austwickia chelonae
Comparison to close relatives: Pseudoclavibacter triregionum
Comparison to close relatives: Klugiella xanthotipulae
Comparison to close relatives: Planctomonas psychrotolerans
Comparison to close relatives: Clavibacter sepedonicus
Comparison to close relatives: Microcella putealis
Comparison to close relatives: Clavibacter phaseoli
Comparison to close relatives: Clavibacter lycopersici
Comparison to close relatives: Clavibacter nebraskensis
Comparison to close relatives: Microcella alkaliphila
Comparison to close relatives: Clavibacter tessellarius
Comparison to close relatives: Sporichthya polymorpha
Comparison to close relatives: Clavibacter insidiosus
Comparison to close relatives: Marisediminicola senii
Comparison to close relatives: Blastococcus carthaginiensis
Comparison to close relatives: Blastococcus saxobsidens
Comparison to close relatives: Glaciihabitans tibetensis
Comparison to close relatives: Kineosporia aurantiaca
Comparison to close relatives: Pontimonas salivibrio
Comparison to close relatives: Xylanimonas protaetiae
Comparison to close relatives: Pseudactinotalea suaedae
Comparison to close relatives: Sporichthya brevicatena
Comparison to close relatives: Clavibacter capsici
Comparison to close relatives: Peterkaempfera bronchialis
Comparison to close relatives: Labedella endophytica
Comparison to close relatives: Streptacidiphilus carbonis
Comparison to close relatives: Clavibacter michiganensis
Comparison to close relatives: Clavibacter californiensis
CAZyme: GH6
CAZyme: GH16
CAZyme: GH13
CAZyme: GH18
CAZyme: GH0
CAZyme: GH23
CAZyme: GH43
CAZyme: GT13
CAZyme: GT51
CAZyme: GT4
CAZyme: GT1
CAZyme: GT2
CAZyme: GT0
CAZyme: GT28
CAZyme: GT39
CAZyme: CE4
CAZyme: CE12
CAZyme: CE14
CAZyme: CBM50
CAZyme: CBM2
CAZyme: CBM13
CAZyme: CBM48
Pathway: Glycolysis, core module involving three-carbon compounds
Pathway: PRPP biosynthesis, ribose 5P => PRPP

GCA_000378905.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000378905.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000378905.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000378905.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000378905.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000378905.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000378905.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000378905.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000378905.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000378905.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000378905.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000378905.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000378905.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000378905.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000378905.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000378905.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000378905.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000378905.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000378905.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000378905.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000378905.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000378905.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000378905.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000378905.1 (Pathway)
Pathway: Histidine degradation, histidine => N-formiminoglutamate => glutamate
Metabolic module: M00045

GCA_000378905.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000378905.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000378905.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000378905.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000378905.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000378905.1 (Pathway)
Pathway: Histidine degradation
Metabolic module: MF0056

GCA_000378905.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000378905.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000378905.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000378905.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_000378905.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000378905.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 1.4
Relative abundance (%): 0.01

GCA_000378905.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.06

GCA_000378905.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 1.4
Relative abundance (%): 0.01

GCA_000378905.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 60.7
Relative abundance (%): 3.15

GCA_000378905.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.02

GCA_000378905.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 1.1
Relative abundance (%): 0

GCA_000378905.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.01

GCA_000378905.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 4.9
Relative abundance (%): 0.91

GCA_000378905.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 2.5
Relative abundance (%): 0.03

GCA_000378905.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 2.1
Relative abundance (%): 0.01

GCA_000378905.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_000378905.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 3.5
Relative abundance (%): 0.61

GCA_000378905.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 8.6
Relative abundance (%): 1.16

GCA_000378905.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.5
Relative abundance (%): 0

GCA_000378905.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.01

GCA_000378905.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.01

GCA_000378905.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.6
Relative abundance (%): 0

GCA_000378905.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.03

GCA_000378905.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000378905.1 (MAGs)
MAGs: no MAG matches found