GCA_000378885.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Vallicoccus soli
Comparison to close relatives: Cellulomonas chengniuliangii
Comparison to close relatives: Streptacidiphilus fuscans
Comparison to close relatives: Streptomyces neyagawaensis
Comparison to close relatives: Devriesea agamarum
Comparison to close relatives: Streptomyces eurythermus
Comparison to close relatives: Streptomyces cinnabarigriseus
Comparison to close relatives: Streptomyces tendae
Comparison to close relatives: Streptomyces ortus
Comparison to close relatives: Janibacter hoylei
Comparison to close relatives: Streptomyces galbus
Comparison to close relatives: Streptomyces scabiei
Comparison to close relatives: Aurantimicrobium minutum
Comparison to close relatives: Xylanimonas protaetiae
Comparison to close relatives: Pseudactinotalea suaedae
Comparison to close relatives: Clavibacter capsici
Comparison to close relatives: Streptomyces bikiniensis
Comparison to close relatives: Streptomyces broussonetiae
Comparison to close relatives: Sporichthya polymorpha
Comparison to close relatives: Cryptosporangium eucalypti
Comparison to close relatives: Ornithinimicrobium flavum
Comparison to close relatives: Frigoribacterium endophyticum
Comparison to close relatives: Streptomyces mashuensis
Comparison to close relatives: Sporichthya brevicatena
Comparison to close relatives: Streptomyces coelescens
Comparison to close relatives: Streptomyces dengpaensis
Comparison to close relatives: Streptomyces niveiscabiei
Comparison to close relatives: Streptomyces europaeiscabiei
Comparison to close relatives: Mobilicoccus pelagius
Comparison to close relatives: Streptomyces liliiviolaceus
Comparison to close relatives: Streptomyces geranii
Comparison to close relatives: Alpinimonas psychrophila
Comparison to close relatives: Streptomyces acidiscabies
Comparison to close relatives: Cellulomonas bogoriensis
Comparison to close relatives: Cryobacterium tepidiphilum
Comparison to close relatives: Aurantimicrobium photophilum
Comparison to close relatives: Streptomyces tritolerans
Comparison to close relatives: Clavibacter sepedonicus
Comparison to close relatives: Clavibacter nebraskensis
Comparison to close relatives: Pontimonas salivibrio
Comparison to close relatives: Pseudoclavibacter triregionum
Comparison to close relatives: Cellulomonas wangsupingiae
Comparison to close relatives: Kitasatospora humi
Comparison to close relatives: Peterkaempfera bronchialis
Comparison to close relatives: Streptomyces rhizoryzae
Comparison to close relatives: Cellulomonas rhizosphaerae
Comparison to close relatives: Streptomyces cyaneochromogenes
Comparison to close relatives: Austwickia chelonae
Comparison to close relatives: Streptomyces akebiae
Comparison to close relatives: Clavibacter michiganensis
Comparison to close relatives: Streptomyces tricolor
Comparison to close relatives: Streptomyces violaceoruber
CAZyme: GH2
CAZyme: GH6
CAZyme: GH36
CAZyme: GH13
CAZyme: GH28
CAZyme: GH16
CAZyme: GH18
CAZyme: GH25
CAZyme: GH101
CAZyme: GH1
CAZyme: GH88
CAZyme: GH135
CAZyme: GH0
CAZyme: GH19
CAZyme: GH23
CAZyme: GT2
CAZyme: GT13
CAZyme: GT51
CAZyme: GT4
CAZyme: GT1
CAZyme: GT0
CAZyme: GT39
CAZyme: GT5
CAZyme: GT28

GCA_000378885.1 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_000378885.1 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_000378885.1 (CAZyme)
CAZyme: CE14
Occurance: 2

GCA_000378885.1 (CAZyme)
CAZyme: CBM50
Occurance: 4

GCA_000378885.1 (CAZyme)
CAZyme: CBM48
Occurance: 5

GCA_000378885.1 (CAZyme)
CAZyme: CBM2
Occurance: 2

GCA_000378885.1 (CAZyme)
CAZyme: CBM13
Occurance: 3

GCA_000378885.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_000378885.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000378885.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000378885.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000378885.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000378885.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000378885.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000378885.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000378885.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000378885.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000378885.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000378885.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000378885.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000378885.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000378885.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000378885.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000378885.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000378885.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000378885.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000378885.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000378885.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000378885.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000378885.1 (Pathway)
Pathway: NADH:quinone oxidoreductase, prokaryotes
Metabolic module: M00144

GCA_000378885.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000378885.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000378885.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000378885.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000378885.1 (Pathway)
Pathway: UDP-Gal biosynthesis, Gal => UDP-Gal
Metabolic module: M00554

GCA_000378885.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000378885.1 (Pathway)
Pathway: Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
Metabolic module: M00632

GCA_000378885.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000378885.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000378885.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCA_000378885.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000378885.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000378885.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000378885.1 (Pathway)
Pathway: C1-unit interconversion, prokaryotes
Metabolic module: M00140

GCA_000378885.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_000378885.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_000378885.1 (Pathway)
Pathway: Xylose degradation
Metabolic module: MF0021

GCA_000378885.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000378885.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000378885.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_000378885.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000378885.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000378885.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000378885.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000378885.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000378885.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000378885.1 (Pathway)
Pathway: 4-aminobutyrate degradation
Metabolic module: MF0076

GCA_000378885.1 (Pathway)
Pathway: Lactate consumption II
Metabolic module: MF0080

GCA_000378885.1 (Pathway)
Pathway: Propionate production II
Metabolic module: MF0094

GCA_000378885.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000378885.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 1.6
Relative abundance (%): 0.01

GCA_000378885.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.01

GCA_000378885.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 1.5
Relative abundance (%): 0.01

GCA_000378885.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 64.7
Relative abundance (%): 2.98

GCA_000378885.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.1

GCA_000378885.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 1.3
Relative abundance (%): 0

GCA_000378885.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.01

GCA_000378885.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 4.3
Relative abundance (%): 0.48

GCA_000378885.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 2.4
Relative abundance (%): 0.04

GCA_000378885.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 2.8
Relative abundance (%): 0.04

GCA_000378885.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000378885.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 2.9
Relative abundance (%): 0.46

GCA_000378885.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 12.2
Relative abundance (%): 0.75

GCA_000378885.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 1
Relative abundance (%): 0

GCA_000378885.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.09

GCA_000378885.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.01

GCA_000378885.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.7
Relative abundance (%): 0

GCA_000378885.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.03

GCA_000378885.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000378885.1 (MAGs)
MAGs: no MAG matches found