GCA_000342265.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Polynucleobacter sinensis
Comparison to close relatives: Polynucleobacter hallstattensis
Comparison to close relatives: Polynucleobacter asymbioticus
Comparison to close relatives: Polynucleobacter ibericus
Comparison to close relatives: Polynucleobacter parvulilacunae
Comparison to close relatives: Polynucleobacter paneuropaeus
Comparison to close relatives: Polynucleobacter sphagniphilus
Comparison to close relatives: Polynucleobacter arcticus
Comparison to close relatives: Polynucleobacter yangtzensis
Comparison to close relatives: Polynucleobacter duraquae
Comparison to close relatives: Polynucleobacter paludilacus
Comparison to close relatives: Polynucleobacter hirudinilacicola
Comparison to close relatives: Polynucleobacter corsicus
Comparison to close relatives: Polynucleobacter aenigmaticus
Comparison to close relatives: Polynucleobacter wuianus
Comparison to close relatives: Polynucleobacter tropicus
Comparison to close relatives: Polynucleobacter bastaniensis
Comparison to close relatives: Polynucleobacter brandtiae
Comparison to close relatives: Polynucleobacter campilacus
Comparison to close relatives: Polynucleobacter alcilacus
Comparison to close relatives: Polynucleobacter antarcticus
Comparison to close relatives: Polynucleobacter nymphae
Comparison to close relatives: Polynucleobacter necessarius
Comparison to close relatives: Polynucleobacter finlandensis
Comparison to close relatives: Polynucleobacter meluiroseus
Comparison to close relatives: Polynucleobacter difficilis
Comparison to close relatives: Polynucleobacter acidiphobus
Comparison to close relatives: Polynucleobacter cosmopolitanus
Comparison to close relatives: Polynucleobacter victoriensis
Comparison to close relatives: Polynucleobacter kasalickyi
Comparison to close relatives: Polynucleobacter rarus
Comparison to close relatives: Cupriavidus pinatubonensis
Comparison to close relatives: Cupriavidus basilensis
Comparison to close relatives: Cupriavidus necator
Comparison to close relatives: Wautersia numazuensis
Comparison to close relatives: Cupriavidus pampae
Comparison to close relatives: Cupriavidus cauae
Comparison to close relatives: Cupriavidus taiwanensis
Comparison to close relatives: Cupriavidus oxalaticus
Comparison to close relatives: Cupriavidus campinensis
Comparison to close relatives: Cupriavidus laharis
Comparison to close relatives: Cupriavidus metallidurans
Comparison to close relatives: Cupriavidus plantarum
Comparison to close relatives: Cupriavidus lacunae
Comparison to close relatives: Cupriavidus alkaliphilus
Comparison to close relatives: Cupriavidus pauculus
Comparison to close relatives: Ralstonia nicotianae
Comparison to close relatives: Cupriavidus agavae
Comparison to close relatives: Ralstonia solanacearum
Comparison to close relatives: Ralstonia wenshanensis
Comparison to close relatives: Cupriavidus numazuensis
CAZyme: GH13
CAZyme: GH6
CAZyme: GH23
CAZyme: GH28
CAZyme: GH101
CAZyme: GH103
CAZyme: GH33
CAZyme: GH102
CAZyme: GH3
CAZyme: GH114
CAZyme: GT13
CAZyme: GT4
CAZyme: GT51
CAZyme: GT22
CAZyme: GT0
CAZyme: GT83
CAZyme: GT2
CAZyme: GT1
CAZyme: GT32
CAZyme: GT28
CAZyme: GT30
CAZyme: GT9
CAZyme: GT19
CAZyme: GT104
CAZyme: CE11

GCA_000342265.1 (CAZyme)
CAZyme: CBM41
Occurance: 2

GCA_000342265.1 (CAZyme)
CAZyme: CBM20
Occurance: 2

GCA_000342265.1 (CAZyme)
CAZyme: CBM50
Occurance: 13

GCA_000342265.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_000342265.1 (CAZyme)
CAZyme: CBM2
Occurance: 1

GCA_000342265.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_000342265.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000342265.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000342265.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000342265.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000342265.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000342265.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000342265.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000342265.1 (Pathway)
Pathway: Glyoxylate cycle
Metabolic module: M00012

GCA_000342265.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000342265.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000342265.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000342265.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000342265.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000342265.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000342265.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000342265.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000342265.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000342265.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000342265.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000342265.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000342265.1 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_000342265.1 (Pathway)
Pathway: ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Metabolic module: M00064

GCA_000342265.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000342265.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000342265.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000342265.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000342265.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000342265.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000342265.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000342265.1 (Pathway)
Pathway: NADH:quinone oxidoreductase, prokaryotes
Metabolic module: M00144

GCA_000342265.1 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_000342265.1 (Pathway)
Pathway: Fumarate reductase, prokaryotes
Metabolic module: M00150

GCA_000342265.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000342265.1 (Pathway)
Pathway: Cytochrome c oxidase, cbb3-type
Metabolic module: M00156

GCA_000342265.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000342265.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000342265.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000342265.1 (Pathway)
Pathway: Dissimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00530

GCA_000342265.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000342265.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000342265.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000342265.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000342265.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000342265.1 (Pathway)
Pathway: Sulfide oxidation, sulfide => sulfur
Metabolic module: M00985

GCA_000342265.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_000342265.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000342265.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc
Metabolic module: M00996

GCA_000342265.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000342265.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_000342265.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_000342265.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000342265.1 (Pathway)
Pathway: Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
Metabolic module: M00896

GCA_000342265.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_000342265.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000342265.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000342265.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => HPP => tyrosine
Metabolic module: M00025

GCA_000342265.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000342265.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000342265.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000342265.1 (Pathway)
Pathway: Tetrahydrofolate biosynthesis, GTP => THF
Metabolic module: M00126

GCA_000342265.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000342265.1 (Pathway)
Pathway: Alanine degradation I
Metabolic module: MF0033

GCA_000342265.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000342265.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000342265.1 (Pathway)
Pathway: Glyoxylate bypass
Metabolic module: MF0063

GCA_000342265.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000342265.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000342265.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000342265.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000342265.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_000342265.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_000342265.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000342265.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 3.2
Relative abundance (%): 0.21

GCA_000342265.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.02

GCA_000342265.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.01

GCA_000342265.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 66.4
Relative abundance (%): 2.03

GCA_000342265.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 2.4
Relative abundance (%): 0.14

GCA_000342265.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 2.1
Relative abundance (%): 0

GCA_000342265.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.01

GCA_000342265.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 6.5
Relative abundance (%): 0.18

GCA_000342265.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 4.1
Relative abundance (%): 0.18

GCA_000342265.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 2.7
Relative abundance (%): 0.02

GCA_000342265.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.4
Relative abundance (%): 0

GCA_000342265.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 31.1
Relative abundance (%): 0.02

GCA_000342265.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 44.5
Relative abundance (%): 0.25

GCA_000342265.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 1.4
Relative abundance (%): 0.06

GCA_000342265.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 2.2
Relative abundance (%): 0.01

GCA_000342265.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.03

GCA_000342265.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.02

GCA_000342265.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.02

GCA_000342265.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.6
Relative abundance (%): 0.02

GCA_000342265.1 (MAGs)
MAGs: no MAG matches found