GCA_000341795.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Rhodococcus canchipurensis
Comparison to close relatives: Rhodococcus pedocola
Comparison to close relatives: Rhodococcus gannanensis
Comparison to close relatives: Rhodococcus olei
Comparison to close relatives: Rhodococcus triatomae
Comparison to close relatives: Rhodococcus pseudokoreensis
Comparison to close relatives: Rhodococcus spongiicola
Comparison to close relatives: Rhodococcus koreensis
Comparison to close relatives: Rhodococcus spelaei
Comparison to close relatives: Tsukamurella wratislaviensis
Comparison to close relatives: Rhodococcus xishaensis
Comparison to close relatives: Rhodococcus soli
Comparison to close relatives: Rhodococcus humicola
Comparison to close relatives: Rhodococcus phenolicus
Comparison to close relatives: Rhodococcus zopfii
Comparison to close relatives: Rhodococcus equi
Comparison to close relatives: Rhodococcus subtropicus
Comparison to close relatives: Rhodococcus corynebacterioides
Comparison to close relatives: Nocardia coeliaca
Comparison to close relatives: Nocardia amamiensis
Comparison to close relatives: Rhodococcus marinonascens
Comparison to close relatives: Nocardia arthritidis
Comparison to close relatives: Nocardia bhagyanarayanae
Comparison to close relatives: Rhodococcus rhodnii
Comparison to close relatives: Rhodococcus imtechensis
Comparison to close relatives: Nocardia araoensis
Comparison to close relatives: Rhodococcus erythropolis
Comparison to close relatives: Rhodococcus oryzae
Comparison to close relatives: Nocardia kroppenstedtii
Comparison to close relatives: Nocardia sputi
Comparison to close relatives: Nocardia aobensis
Comparison to close relatives: Nocardia veterana
Comparison to close relatives: Nocardia pneumoniae
Comparison to close relatives: Rhodococcus opacus
Comparison to close relatives: Rhodococcus qingshengii
Comparison to close relatives: Nocardia globerula
Comparison to close relatives: Nocardia barduliensis
Comparison to close relatives: Nocardia asiatica
Comparison to close relatives: Nocardia africana
Comparison to close relatives: Nocardia noduli
Comparison to close relatives: Nocardia shimofusensis
Comparison to close relatives: Nocardia exalbida
Comparison to close relatives: Nocardia anaemiae
Comparison to close relatives: Millisia brevis
Comparison to close relatives: Nocardia lijiangensis
Comparison to close relatives: Nocardia yamanashiensis
Comparison to close relatives: Nocardia gipuzkoensis
Comparison to close relatives: Nocardia aurea
Comparison to close relatives: Rhodococcus artemisiae
Comparison to close relatives: Prescottella soli
Comparison to close relatives: Prescottella subtropica
Comparison to close relatives: Prescottella equi
Comparison to close relatives: Rhodococcus wratislaviensis
Comparison to close relatives: Rhodococcoides corynebacterioides
Comparison to close relatives: Rhodococcus baikonurensis
Comparison to close relatives: Rhodococcus globerulus
Carbon source: starch
Carbon source: cellulose
CAZyme: GH4
CAZyme: GH23
CAZyme: GH13
CAZyme: GH6
CAZyme: GH15
CAZyme: GH43
CAZyme: GH65
CAZyme: GH28
CAZyme: GH16
CAZyme: GH101
CAZyme: GH57
CAZyme: GH36
CAZyme: GH5
CAZyme: GH32
CAZyme: GH1
CAZyme: GH19
CAZyme: GH63
CAZyme: GH71

GCA_000341795.1 (CAZyme)
CAZyme: GH3
Occurance: 2

GCA_000341795.1 (CAZyme)
CAZyme: GH76
Occurance: 4

GCA_000341795.1 (CAZyme)
CAZyme: GH135
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GH0
Occurance: 4

GCA_000341795.1 (CAZyme)
CAZyme: GH93
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GH39
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GH26
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GH130
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GH25
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GT2
Occurance: 42

GCA_000341795.1 (CAZyme)
CAZyme: GT53
Occurance: 2

GCA_000341795.1 (CAZyme)
CAZyme: GT13
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GT35
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GT51
Occurance: 4

GCA_000341795.1 (CAZyme)
CAZyme: GT4
Occurance: 21

GCA_000341795.1 (CAZyme)
CAZyme: GT0
Occurance: 5

GCA_000341795.1 (CAZyme)
CAZyme: GT1
Occurance: 25

GCA_000341795.1 (CAZyme)
CAZyme: GT89
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GT85
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GT39
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GT83
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GT28
Occurance: 5

GCA_000341795.1 (CAZyme)
CAZyme: GT20
Occurance: 2

GCA_000341795.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GT87
Occurance: 3

GCA_000341795.1 (CAZyme)
CAZyme: GT5
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GT81
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: GT14
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: CE1
Occurance: 10

GCA_000341795.1 (CAZyme)
CAZyme: CE5
Occurance: 3

GCA_000341795.1 (CAZyme)
CAZyme: CE14
Occurance: 10

GCA_000341795.1 (CAZyme)
CAZyme: CE6
Occurance: 3

GCA_000341795.1 (CAZyme)
CAZyme: CE0
Occurance: 2

GCA_000341795.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_000341795.1 (CAZyme)
CAZyme: CE4
Occurance: 2

GCA_000341795.1 (CAZyme)
CAZyme: CBM13
Occurance: 11

GCA_000341795.1 (CAZyme)
CAZyme: CBM48
Occurance: 12

GCA_000341795.1 (CAZyme)
CAZyme: CBM50
Occurance: 17

GCA_000341795.1 (CAZyme)
CAZyme: CBM38
Occurance: 2

GCA_000341795.1 (CAZyme)
CAZyme: CBM32
Occurance: 2

GCA_000341795.1 (CAZyme)
CAZyme: CBM2
Occurance: 6

GCA_000341795.1 (CAZyme)
CAZyme: CBM51
Occurance: 6

GCA_000341795.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_000341795.1 (Pathway)
Pathway: Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate
Metabolic module: M00001

GCA_000341795.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000341795.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000341795.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000341795.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000341795.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000341795.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000341795.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000341795.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000341795.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000341795.1 (Pathway)
Pathway: Methionine biosynthesis, aspartate => homoserine => methionine
Metabolic module: M00017

GCA_000341795.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000341795.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000341795.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000341795.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000341795.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000341795.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000341795.1 (Pathway)
Pathway: Ectoine biosynthesis, aspartate => ectoine
Metabolic module: M00033

GCA_000341795.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000341795.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000341795.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000341795.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000341795.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000341795.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000341795.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000341795.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000341795.1 (Pathway)
Pathway: Acylglycerol degradation
Metabolic module: M00098

GCA_000341795.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000341795.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000341795.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000341795.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000341795.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_000341795.1 (Pathway)
Pathway: Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
Metabolic module: M00123

GCA_000341795.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000341795.1 (Pathway)
Pathway: NADH:quinone oxidoreductase, prokaryotes
Metabolic module: M00144

GCA_000341795.1 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_000341795.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000341795.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000341795.1 (Pathway)
Pathway: Assimilatory sulfate reduction, sulfate => H2S
Metabolic module: M00176

GCA_000341795.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000341795.1 (Pathway)
Pathway: Dissimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00530

GCA_000341795.1 (Pathway)
Pathway: Assimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00531

GCA_000341795.1 (Pathway)
Pathway: Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA
Metabolic module: M00545

GCA_000341795.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000341795.1 (Pathway)
Pathway: UDP-Gal biosynthesis, Gal => UDP-Gal
Metabolic module: M00554

GCA_000341795.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_000341795.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000341795.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_000341795.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000341795.1 (Pathway)
Pathway: Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
Metabolic module: M00632

GCA_000341795.1 (Pathway)
Pathway: Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA
Metabolic module: M00741

GCA_000341795.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000341795.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000341795.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000341795.1 (Pathway)
Pathway: Galactofuranan biosynthesis, decaprenyl phosphate + UDP-GlcNAc (+ dTDP-Rha/UDP-Galf) => GL-5
Metabolic module: M00888

GCA_000341795.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCA_000341795.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCA_000341795.1 (Pathway)
Pathway: Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme
Metabolic module: M00926

GCA_000341795.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000341795.1 (Pathway)
Pathway: Proline metabolism
Metabolic module: M00972

GCA_000341795.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000341795.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000341795.1 (Pathway)
Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf
Metabolic module: M01004

GCA_000341795.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000341795.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_000341795.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000341795.1 (Pathway)
Pathway: Glycogen biosynthesis, glucose-1P => glycogen/starch
Metabolic module: M00854

GCA_000341795.1 (Pathway)
Pathway: Pentose phosphate pathway (Pentose phosphate cycle)
Metabolic module: M00004

GCA_000341795.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_000341795.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000341795.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000341795.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000341795.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000341795.1 (Pathway)
Pathway: Tetrahydrofolate biosynthesis, GTP => THF
Metabolic module: M00126

GCA_000341795.1 (Pathway)
Pathway: Siroheme biosynthesis, glutamyl-tRNA => siroheme
Metabolic module: M00846

GCA_000341795.1 (Pathway)
Pathway: Fructose degradation
Metabolic module: MF0015

GCA_000341795.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000341795.1 (Pathway)
Pathway: Tyrosine degradation I
Metabolic module: MF0026

GCA_000341795.1 (Pathway)
Pathway: Glutamate degradation II
Metabolic module: MF0031

GCA_000341795.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000341795.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000341795.1 (Pathway)
Pathway: Isoleucine degradation
Metabolic module: MF0036

GCA_000341795.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000341795.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000341795.1 (Pathway)
Pathway: Glutamine degradation I
Metabolic module: MF0046

GCA_000341795.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000341795.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000341795.1 (Pathway)
Pathway: Triacylglycerol degradation
Metabolic module: MF0064

GCA_000341795.1 (Pathway)
Pathway: Bifidobacterium shunt
Metabolic module: MF0065

GCA_000341795.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000341795.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_000341795.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_000341795.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000341795.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000341795.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000341795.1 (Pathway)
Pathway: Urea degradation
Metabolic module: MF0085

GCA_000341795.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000341795.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_000341795.1 (Pathway)
Pathway: Lactate production
Metabolic module: MF0092

GCA_000341795.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 8.4
Relative abundance (%): 0.15

GCA_000341795.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 1.4
Relative abundance (%): 0.05

GCA_000341795.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 3.3
Relative abundance (%): 0.01

GCA_000341795.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 17.5
Relative abundance (%): 0.74

GCA_000341795.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 2.9
Relative abundance (%): 0.08

GCA_000341795.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 20
Relative abundance (%): 0.03

GCA_000341795.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 8.3
Relative abundance (%): 3.52

GCA_000341795.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 4.3
Relative abundance (%): 0.06

GCA_000341795.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 23.3
Relative abundance (%): 0.19

GCA_000341795.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 31.8
Relative abundance (%): 0.19

GCA_000341795.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.01

GCA_000341795.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 28.4
Relative abundance (%): 0.07

GCA_000341795.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 35.2
Relative abundance (%): 1.05

GCA_000341795.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 57.5
Relative abundance (%): 0.07

GCA_000341795.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 16.5
Relative abundance (%): 0.66

GCA_000341795.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 2.4
Relative abundance (%): 0.17

GCA_000341795.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 6.6
Relative abundance (%): 0.03

GCA_000341795.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 12.7
Relative abundance (%): 0.35

GCA_000341795.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 1.6
Relative abundance (%): 0.12

GCA_000341795.1 (MAGs)
MAGs: no MAG matches found