GCA_000335735.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Phenylobacterium deserti
Comparison to close relatives: Caulobacter rhizosphaerae
Comparison to close relatives: Streptomyces longisporoflavus
Comparison to close relatives: Brevundimonas fontaquae
Comparison to close relatives: Caulobacter segnis
Comparison to close relatives: Caulobacter ginsengisoli
Comparison to close relatives: Asticcacaulis taihuensis
Comparison to close relatives: Caulobacter henricii
Comparison to close relatives: Caulobacter vibrioides
Comparison to close relatives: Brevundimonas pondensis
Comparison to close relatives: Brevundimonas canariensis
Comparison to close relatives: Caulobacter fusiformis
Comparison to close relatives: Brevundimonas lutea
Comparison to close relatives: Brevundimonas abyssalis
Comparison to close relatives: Asticcacaulis biprosthecium
Comparison to close relatives: Brevundimonas basaltis
Comparison to close relatives: Phenylobacterium conjunctum
Comparison to close relatives: Brevundimonas terrae
Comparison to close relatives: Brevundimonas denitrificans
Comparison to close relatives: Brevundimonas aveniformis
Comparison to close relatives: Brevundimonas staleyi
Comparison to close relatives: Brevundimonas mongoliensis
Comparison to close relatives: Brevundimonas faecalis
Comparison to close relatives: Brevundimonas bullata
Comparison to close relatives: Asticcacaulis benevestitus
Comparison to close relatives: Brevundimonas mediterranea
Comparison to close relatives: Brevundimonas variabilis
Comparison to close relatives: Brevundimonas diminuta
Comparison to close relatives: Brevundimonas viscosa
Comparison to close relatives: Brevundimonas poindexterae
Comparison to close relatives: Brevundimonas huaxiensis
Comparison to close relatives: Brevundimonas alba
Comparison to close relatives: Brevundimonas intermedia
Comparison to close relatives: Brevundimonas vesicularis
Comparison to close relatives: Brevundimonas humi
Comparison to close relatives: Brevundimonas bacteroides
Comparison to close relatives: Brevundimonas lenta
Comparison to close relatives: Brevundimonas subvibrioides
Comparison to close relatives: Brevundimonas goettingensis
Comparison to close relatives: Brevundimonas naejangsanensis
Comparison to close relatives: Brevundimonas halotolerans
Comparison to close relatives: Caulobacter mirabilis
Comparison to close relatives: Brevundimonas kwangchunensis
Comparison to close relatives: Brevundimonas fluminis
Comparison to close relatives: Caulobacter flavus
Comparison to close relatives: Brevundimonas aurantiaca
Comparison to close relatives: Brevundimonas nasdae
Comparison to close relatives: Brevundimonas vancanneytii
Comparison to close relatives: Brevundimonas albigilva
Comparison to close relatives: Brevundimonas balnearis
Carbon source: cellulose
CAZyme: GH0
CAZyme: GH13
CAZyme: GH31
CAZyme: GH6
CAZyme: GH3
CAZyme: GH15
CAZyme: GH74
CAZyme: GH65
CAZyme: GH97
CAZyme: GH23
CAZyme: GH11
CAZyme: GH28
CAZyme: GH9
CAZyme: GH35
CAZyme: GH29
CAZyme: GH101
CAZyme: GH39
CAZyme: GH144
CAZyme: GH19
CAZyme: GH103
CAZyme: GH10
CAZyme: GH24
CAZyme: GH135
CAZyme: GH102
CAZyme: GH16

GCA_000335735.1 (CAZyme)
CAZyme: GH1
Occurance: 2

GCA_000335735.1 (CAZyme)
CAZyme: GH43
Occurance: 1

GCA_000335735.1 (CAZyme)
CAZyme: GT13
Occurance: 1

GCA_000335735.1 (CAZyme)
CAZyme: GT51
Occurance: 4

GCA_000335735.1 (CAZyme)
CAZyme: GT2
Occurance: 21

GCA_000335735.1 (CAZyme)
CAZyme: GT4
Occurance: 23

GCA_000335735.1 (CAZyme)
CAZyme: GT5
Occurance: 1

GCA_000335735.1 (CAZyme)
CAZyme: GT107
Occurance: 1

GCA_000335735.1 (CAZyme)
CAZyme: GT83
Occurance: 1

GCA_000335735.1 (CAZyme)
CAZyme: GT1
Occurance: 3

GCA_000335735.1 (CAZyme)
CAZyme: GT9
Occurance: 3

GCA_000335735.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_000335735.1 (CAZyme)
CAZyme: GT28
Occurance: 5

GCA_000335735.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_000335735.1 (CAZyme)
CAZyme: GT61
Occurance: 1

GCA_000335735.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_000335735.1 (CAZyme)
CAZyme: GT26
Occurance: 2

GCA_000335735.1 (CAZyme)
CAZyme: PL0
Occurance: 1

GCA_000335735.1 (CAZyme)
CAZyme: CE0
Occurance: 3

GCA_000335735.1 (CAZyme)
CAZyme: CE14
Occurance: 2

GCA_000335735.1 (CAZyme)
CAZyme: CE6
Occurance: 2

GCA_000335735.1 (CAZyme)
CAZyme: CE11
Occurance: 2

GCA_000335735.1 (CAZyme)
CAZyme: CE4
Occurance: 3

GCA_000335735.1 (CAZyme)
CAZyme: CBM32
Occurance: 1

GCA_000335735.1 (CAZyme)
CAZyme: CBM50
Occurance: 10

GCA_000335735.1 (CAZyme)
CAZyme: CBM9
Occurance: 2

GCA_000335735.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_000335735.1 (CAZyme)
CAZyme: CBM5
Occurance: 3

GCA_000335735.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_000335735.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_000335735.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000335735.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000335735.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000335735.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000335735.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000335735.1 (Pathway)
Pathway: Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Metabolic module: M00008

GCA_000335735.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000335735.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000335735.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000335735.1 (Pathway)
Pathway: Glyoxylate cycle
Metabolic module: M00012

GCA_000335735.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000335735.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000335735.1 (Pathway)
Pathway: Methionine biosynthesis, aspartate => homoserine => methionine
Metabolic module: M00017

GCA_000335735.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000335735.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000335735.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000335735.1 (Pathway)
Pathway: Methionine degradation
Metabolic module: M00035

GCA_000335735.1 (Pathway)
Pathway: Leucine degradation, leucine => acetoacetate + acetyl-CoA
Metabolic module: M00036

GCA_000335735.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000335735.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000335735.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000335735.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000335735.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000335735.1 (Pathway)
Pathway: C5 isoprenoid biosynthesis, non-mevalonate pathway
Metabolic module: M00096

GCA_000335735.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000335735.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000335735.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000335735.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000335735.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000335735.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000335735.1 (Pathway)
Pathway: Cytochrome bd ubiquinol oxidase
Metabolic module: M00153

GCA_000335735.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000335735.1 (Pathway)
Pathway: Cysteine biosynthesis, homocysteine + serine => cysteine
Metabolic module: M00338

GCA_000335735.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, bacteria
Metabolic module: M00364

GCA_000335735.1 (Pathway)
Pathway: Cytochrome o ubiquinol oxidase
Metabolic module: M00417

GCA_000335735.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000335735.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000335735.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000335735.1 (Pathway)
Pathway: Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA
Metabolic module: M00741

GCA_000335735.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000335735.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000335735.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000335735.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000335735.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_000335735.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000335735.1 (Pathway)
Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA
Metabolic module: M00999

GCA_000335735.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000335735.1 (Pathway)
Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf
Metabolic module: M01004

GCA_000335735.1 (Pathway)
Pathway: Astaxanthin biosynthesis, beta-carotene => astaxanthin
Metabolic module: M01044

GCA_000335735.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000335735.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_000335735.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000335735.1 (Pathway)
Pathway: Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
Metabolic module: M00896

GCA_000335735.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000335735.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000335735.1 (Pathway)
Pathway: Histidine degradation, histidine => N-formiminoglutamate => glutamate
Metabolic module: M00045

GCA_000335735.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000335735.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000335735.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000335735.1 (Pathway)
Pathway: Tetrahydrofolate biosynthesis, GTP => THF
Metabolic module: M00126

GCA_000335735.1 (Pathway)
Pathway: Arabinoxylan degradation
Metabolic module: MF0001

GCA_000335735.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000335735.1 (Pathway)
Pathway: Alanine degradation I
Metabolic module: MF0033

GCA_000335735.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000335735.1 (Pathway)
Pathway: Isoleucine degradation
Metabolic module: MF0036

GCA_000335735.1 (Pathway)
Pathway: Leucine degradation
Metabolic module: MF0037

GCA_000335735.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_000335735.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000335735.1 (Pathway)
Pathway: Cysteine biosynthesis/homocysteine degradation
Metabolic module: MF0043

GCA_000335735.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000335735.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_000335735.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000335735.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000335735.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000335735.1 (Pathway)
Pathway: Histidine degradation
Metabolic module: MF0056

GCA_000335735.1 (Pathway)
Pathway: Glyoxylate bypass
Metabolic module: MF0063

GCA_000335735.1 (Pathway)
Pathway: Entner-Doudoroff pathway
Metabolic module: MF0066

GCA_000335735.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000335735.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_000335735.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000335735.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000335735.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000335735.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_000335735.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000335735.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 23.7
Relative abundance (%): 0.35

GCA_000335735.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 3.2
Relative abundance (%): 0.12

GCA_000335735.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 18.5
Relative abundance (%): 0.05

GCA_000335735.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 45.1
Relative abundance (%): 0.26

GCA_000335735.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 22.9
Relative abundance (%): 1.22

GCA_000335735.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 17.6
Relative abundance (%): 0.01

GCA_000335735.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 11.5
Relative abundance (%): 0.11

GCA_000335735.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 17.7
Relative abundance (%): 0.25

GCA_000335735.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 35.6
Relative abundance (%): 0.19

GCA_000335735.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 25.3
Relative abundance (%): 0.08

GCA_000335735.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 8.5
Relative abundance (%): 0.05

GCA_000335735.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 38
Relative abundance (%): 0.09

GCA_000335735.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 55.6
Relative abundance (%): 0.2

GCA_000335735.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 31.9
Relative abundance (%): 0.06

GCA_000335735.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 8.6
Relative abundance (%): 0.06

GCA_000335735.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 11.9
Relative abundance (%): 0.09

GCA_000335735.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 12.4
Relative abundance (%): 0.37

GCA_000335735.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 49.8
Relative abundance (%): 0.54

GCA_000335735.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 5.2
Relative abundance (%): 0.06

GCA_000335735.1 (MAGs)
MAGs: no MAG matches found