GCA_000335715.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Vogesella aquatica
Comparison to close relatives: Vogesella perlucida
Comparison to close relatives: Vogesella mureinivorans
Comparison to close relatives: Vogesella urethralis
Comparison to close relatives: Vogesella amnigena
Comparison to close relatives: Vogesella margarita
Comparison to close relatives: Vogesella lacus
Comparison to close relatives: Vogesella oryzae
Comparison to close relatives: Vogesella fluminis
Comparison to close relatives: Vogesella indigofera
Comparison to close relatives: Vogesella facilis
Comparison to close relatives: Vogesella alkaliphila
Comparison to close relatives: Gulbenkiania mobilis
Comparison to close relatives: Gulbenkiania indica
Comparison to close relatives: Pseudogulbenkiania gefcensis
Comparison to close relatives: Crenobacter intestini
Comparison to close relatives: Paludibacterium purpuratum
Comparison to close relatives: Chromobacterium sphagni
Comparison to close relatives: Chromobacterium paludis
Comparison to close relatives: Craterilacuibacter sinensis
Comparison to close relatives: Chromobacterium vaccinii
Comparison to close relatives: Aquitalea pelogenes
Comparison to close relatives: Paludibacterium paludis
Comparison to close relatives: Chromobacterium phragmitis
Comparison to close relatives: Chromobacterium alticapitis
Comparison to close relatives: Aquitalea denitrificans
Comparison to close relatives: Chromobacterium subtsugae
Comparison to close relatives: Chromobacterium sinusclupearum
Comparison to close relatives: Laribacter hongkongensis
Comparison to close relatives: Aquitalea palustris
Comparison to close relatives: Crenobacter luteus
Comparison to close relatives: Aquitalea magnusonii
Comparison to close relatives: Chromobacterium amazonense
Comparison to close relatives: Crenobacter cavernae
Comparison to close relatives: Paludibacterium yongneupense
Comparison to close relatives: Chromobacterium violaceum
Comparison to close relatives: Chromobacterium haemolyticum
Comparison to close relatives: Aquitalea aquatilis
Comparison to close relatives: Chromobacterium aquaticum
Comparison to close relatives: Pseudogulbenkiania subflava
Comparison to close relatives: Kingella oralis
Comparison to close relatives: Neisseria zalophi
Comparison to close relatives: Neisseria weixii
Comparison to close relatives: Neisseria wadsworthii
Comparison to close relatives: Neisseria weaveri
Comparison to close relatives: Neisseria sicca
Comparison to close relatives: Neisseria polysaccharea
Comparison to close relatives: Leeia oryzae
Comparison to close relatives: Kingella negevensis
Comparison to close relatives: Chromobacterium rhizoryzae
CAZyme: GH13
CAZyme: GH6
CAZyme: GH16
CAZyme: GH23
CAZyme: GH28
CAZyme: GH4
CAZyme: GH101
CAZyme: GH3
CAZyme: GH102
CAZyme: GH5
CAZyme: GH0
CAZyme: GH103
CAZyme: GH32
CAZyme: GH1
CAZyme: GH19
CAZyme: GH73
CAZyme: GH130
CAZyme: GH108
CAZyme: GH18
CAZyme: GT2
CAZyme: GT4
CAZyme: GT13
CAZyme: GT51
CAZyme: GT22
CAZyme: GT83
CAZyme: GT1

GCA_000335715.1 (CAZyme)
CAZyme: GT47
Occurance: 1

GCA_000335715.1 (CAZyme)
CAZyme: GT28
Occurance: 5

GCA_000335715.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_000335715.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_000335715.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_000335715.1 (CAZyme)
CAZyme: GT104
Occurance: 1

GCA_000335715.1 (CAZyme)
CAZyme: GT9
Occurance: 5

GCA_000335715.1 (CAZyme)
CAZyme: GT0
Occurance: 1

GCA_000335715.1 (CAZyme)
CAZyme: GT26
Occurance: 1

GCA_000335715.1 (CAZyme)
CAZyme: CE11
Occurance: 5

GCA_000335715.1 (CAZyme)
CAZyme: CE14
Occurance: 1

GCA_000335715.1 (CAZyme)
CAZyme: CE4
Occurance: 2

GCA_000335715.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_000335715.1 (CAZyme)
CAZyme: CE1
Occurance: 1

GCA_000335715.1 (CAZyme)
CAZyme: CBM20
Occurance: 2

GCA_000335715.1 (CAZyme)
CAZyme: CBM41
Occurance: 6

GCA_000335715.1 (CAZyme)
CAZyme: CBM50
Occurance: 17

GCA_000335715.1 (CAZyme)
CAZyme: CBM5
Occurance: 5

GCA_000335715.1 (CAZyme)
CAZyme: CBM13
Occurance: 3

GCA_000335715.1 (CAZyme)
CAZyme: CBM48
Occurance: 2

GCA_000335715.1 (CAZyme)
CAZyme: CBM56
Occurance: 1

GCA_000335715.1 (CAZyme)
CAZyme: CBM2
Occurance: 2

GCA_000335715.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000335715.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000335715.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000335715.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000335715.1 (Pathway)
Pathway: Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Metabolic module: M00008

GCA_000335715.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000335715.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000335715.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000335715.1 (Pathway)
Pathway: Glyoxylate cycle
Metabolic module: M00012

GCA_000335715.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000335715.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000335715.1 (Pathway)
Pathway: Methionine biosynthesis, aspartate => homoserine => methionine
Metabolic module: M00017

GCA_000335715.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000335715.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000335715.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000335715.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000335715.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000335715.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000335715.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000335715.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000335715.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000335715.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000335715.1 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_000335715.1 (Pathway)
Pathway: ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Metabolic module: M00064

GCA_000335715.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000335715.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000335715.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000335715.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000335715.1 (Pathway)
Pathway: Acylglycerol degradation
Metabolic module: M00098

GCA_000335715.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000335715.1 (Pathway)
Pathway: Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol
Metabolic module: M00117

GCA_000335715.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000335715.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000335715.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000335715.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_000335715.1 (Pathway)
Pathway: Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
Metabolic module: M00123

GCA_000335715.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000335715.1 (Pathway)
Pathway: NADH:quinone oxidoreductase, prokaryotes
Metabolic module: M00144

GCA_000335715.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000335715.1 (Pathway)
Pathway: Cytochrome bd ubiquinol oxidase
Metabolic module: M00153

GCA_000335715.1 (Pathway)
Pathway: Cytochrome c oxidase, cbb3-type
Metabolic module: M00156

GCA_000335715.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000335715.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000335715.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000335715.1 (Pathway)
Pathway: Dissimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00530

GCA_000335715.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000335715.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000335715.1 (Pathway)
Pathway: Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP
Metabolic module: M00572

GCA_000335715.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_000335715.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000335715.1 (Pathway)
Pathway: Imipenem resistance, repression of porin OprD
Metabolic module: M00745

GCA_000335715.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000335715.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000335715.1 (Pathway)
Pathway: Arginine succinyltransferase pathway, arginine => glutamate
Metabolic module: M00879

GCA_000335715.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000335715.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000335715.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_000335715.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000335715.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc
Metabolic module: M00996

GCA_000335715.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000335715.1 (Pathway)
Pathway: UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc
Metabolic module: M01009

GCA_000335715.1 (Pathway)
Pathway: UDP-ManNAc3NAcA biosynthesis, UDP-GlcNAc => UDP-ManNAc3NAcA
Metabolic module: M01035

GCA_000335715.1 (Pathway)
Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA
Metabolic module: M01036

GCA_000335715.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_000335715.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000335715.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_000335715.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000335715.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000335715.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => HPP => tyrosine
Metabolic module: M00025

GCA_000335715.1 (Pathway)
Pathway: Histidine degradation, histidine => N-formiminoglutamate => glutamate
Metabolic module: M00045

GCA_000335715.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000335715.1 (Pathway)
Pathway: De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP
Metabolic module: M00051

GCA_000335715.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000335715.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000335715.1 (Pathway)
Pathway: Tetrahydrofolate biosynthesis, GTP => THF
Metabolic module: M00126

GCA_000335715.1 (Pathway)
Pathway: Betaine biosynthesis, choline => betaine
Metabolic module: M00555

GCA_000335715.1 (Pathway)
Pathway: Siroheme biosynthesis, glutamyl-tRNA => siroheme
Metabolic module: M00846

GCA_000335715.1 (Pathway)
Pathway: Fructose degradation
Metabolic module: MF0015

GCA_000335715.1 (Pathway)
Pathway: Ribose degradation
Metabolic module: MF0020

GCA_000335715.1 (Pathway)
Pathway: Tryptophan degradation
Metabolic module: MF0025

GCA_000335715.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000335715.1 (Pathway)
Pathway: Aspartate degradation II
Metabolic module: MF0029

GCA_000335715.1 (Pathway)
Pathway: Alanine degradation I
Metabolic module: MF0033

GCA_000335715.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000335715.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000335715.1 (Pathway)
Pathway: Leucine degradation
Metabolic module: MF0037

GCA_000335715.1 (Pathway)
Pathway: Methionine degradation II
Metabolic module: MF0039

GCA_000335715.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000335715.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000335715.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_000335715.1 (Pathway)
Pathway: Glutamine degradation I
Metabolic module: MF0046

GCA_000335715.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000335715.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000335715.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000335715.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000335715.1 (Pathway)
Pathway: Arginine degradation II
Metabolic module: MF0052

GCA_000335715.1 (Pathway)
Pathway: Histidine degradation
Metabolic module: MF0056

GCA_000335715.1 (Pathway)
Pathway: Glyoxylate bypass
Metabolic module: MF0063

GCA_000335715.1 (Pathway)
Pathway: Entner-Doudoroff pathway
Metabolic module: MF0066

GCA_000335715.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000335715.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000335715.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000335715.1 (Pathway)
Pathway: 4-aminobutyrate degradation
Metabolic module: MF0076

GCA_000335715.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_000335715.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000335715.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_000335715.1 (Pathway)
Pathway: Lactate production
Metabolic module: MF0092

GCA_000335715.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000335715.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 6.3
Relative abundance (%): 0.7

GCA_000335715.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_000335715.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.01

GCA_000335715.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 21.6
Relative abundance (%): 0.17

GCA_000335715.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0.6
Relative abundance (%): 0.01

GCA_000335715.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.9
Relative abundance (%): 0

GCA_000335715.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.6
Relative abundance (%): 0

GCA_000335715.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 1
Relative abundance (%): 0.01

GCA_000335715.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 2.5
Relative abundance (%): 0.18

GCA_000335715.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 2.4
Relative abundance (%): 0.01

GCA_000335715.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.02

GCA_000335715.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 11.9
Relative abundance (%): 0.01

GCA_000335715.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 11.4
Relative abundance (%): 0.04

GCA_000335715.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.01

GCA_000335715.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.01

GCA_000335715.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.02

GCA_000335715.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0

GCA_000335715.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.06

GCA_000335715.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.01

GCA_000335715.1 (MAGs)
MAGs: no MAG matches found