GCA_000333815.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Rubneribacter badeniensis
Comparison to close relatives: Enorma timonensis
Comparison to close relatives: Collinsella aerofaciens
Comparison to close relatives: Parolsenella massiliensis
Comparison to close relatives: Parolsenella catena
Comparison to close relatives: Arabiibacter massiliensis
Comparison to close relatives: Olsenella faecalis
Comparison to close relatives: Collinsella vaginalis
Comparison to close relatives: Collinsella ihumii
Comparison to close relatives: Coriobacterium glomerans
Comparison to close relatives: Collinsella massiliensis
Comparison to close relatives: Enorma shizhengliae
Comparison to close relatives: Adlercreutzia equolifaciens subsp. celatus
Comparison to close relatives: Enorma massiliensis
Comparison to close relatives: Slackia exigua
Comparison to close relatives: Adlercreutzia caecicola
Comparison to close relatives: Adlercreutzia hattorii
Comparison to close relatives: Adlercreutzia equolifaciens subsp. equolifaciens
Comparison to close relatives: Ellagibacter isourolithinifaciens
Comparison to close relatives: Olsenella phocaeensis
Comparison to close relatives: Adlercreutzia mucosicola
Comparison to close relatives: Leptogranulimonas caecicola
Comparison to close relatives: Muricaecibacterium torontonense
Comparison to close relatives: Gordonibacter urolithinfaciens
Comparison to close relatives: Berryella wangjianweii
Comparison to close relatives: Slackia heliotrinireducens
Comparison to close relatives: Tractidigestivibacter scatoligenes
Comparison to close relatives: Granulimonas faecalis
Comparison to close relatives: Eggerthella lenta
Comparison to close relatives: Eggerthella guodeyinii
Comparison to close relatives: Eggerthella timonensis
Comparison to close relatives: Olsenella massiliensis
Comparison to close relatives: Collinsella tanakaei
Comparison to close relatives: Adlercreutzia muris
Comparison to close relatives: Senegalimassilia anaerobia
Comparison to close relatives: Paraeggerthella hongkongensis
Comparison to close relatives: Collinsella stercoris
Comparison to close relatives: Collinsella intestinalis
Comparison to close relatives: Olsenella porci
Comparison to close relatives: Senegalimassilia faecalis
Comparison to close relatives: Olsenella uli
Comparison to close relatives: Cryptobacterium curtum
Comparison to close relatives: Slackia equolifaciens
Comparison to close relatives: Berryella intestinalis
Comparison to close relatives: Adlercreutzia caecimuris
Comparison to close relatives: Thermophilibacter provencensis
Comparison to close relatives: Xiamenia xianingshaonis
Comparison to close relatives: Slackia faecicanis
Comparison to close relatives: Slackia isoflavoniconvertens
Comparison to close relatives: Slackia piriformis
Comparison to close relatives: Paratractidigestivibacter faecalis
Comparison to close relatives: Adlercreutzia equolifaciens
Comparison to close relatives: Parvibacter caecicola
Carbon source: cellobiose
Carbon source: starch
CAZyme: GH73
CAZyme: GH13
CAZyme: GH77
CAZyme: GH6
CAZyme: GH16
CAZyme: GH2
CAZyme: GH3
CAZyme: GH78
CAZyme: GH36
CAZyme: GH35
CAZyme: GH43
CAZyme: GH28
CAZyme: GH79
CAZyme: GH1
CAZyme: GH4
CAZyme: GH49
CAZyme: GH71
CAZyme: GH5
CAZyme: GH0
CAZyme: GH19
CAZyme: GH23

GCA_000333815.1 (CAZyme)
CAZyme: GT2
Occurance: 25

GCA_000333815.1 (CAZyme)
CAZyme: GT13
Occurance: 2

GCA_000333815.1 (CAZyme)
CAZyme: GT35
Occurance: 1

GCA_000333815.1 (CAZyme)
CAZyme: GT5
Occurance: 2

GCA_000333815.1 (CAZyme)
CAZyme: GT51
Occurance: 1

GCA_000333815.1 (CAZyme)
CAZyme: GT4
Occurance: 9

GCA_000333815.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_000333815.1 (CAZyme)
CAZyme: GT1
Occurance: 1

GCA_000333815.1 (CAZyme)
CAZyme: GT8
Occurance: 1

GCA_000333815.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_000333815.1 (CAZyme)
CAZyme: GT26
Occurance: 1

GCA_000333815.1 (CAZyme)
CAZyme: CE9
Occurance: 3

GCA_000333815.1 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_000333815.1 (CAZyme)
CAZyme: CBM50
Occurance: 5

GCA_000333815.1 (CAZyme)
CAZyme: CBM48
Occurance: 4

GCA_000333815.1 (CAZyme)
CAZyme: CBM2
Occurance: 2

GCA_000333815.1 (CAZyme)
CAZyme: CBM13
Occurance: 1

GCA_000333815.1 (CAZyme)
CAZyme: CBM5
Occurance: 1

GCA_000333815.1 (Pathway)
Pathway: Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate
Metabolic module: M00001

GCA_000333815.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000333815.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000333815.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000333815.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000333815.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000333815.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000333815.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000333815.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000333815.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000333815.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000333815.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000333815.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000333815.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000333815.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000333815.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000333815.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCA_000333815.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000333815.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000333815.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000333815.1 (Pathway)
Pathway: D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P
Metabolic module: M00631

GCA_000333815.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000333815.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000333815.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCA_000333815.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000333815.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000333815.1 (Pathway)
Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf
Metabolic module: M01004

GCA_000333815.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000333815.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_000333815.1 (Pathway)
Pathway: Glycogen biosynthesis, glucose-1P => glycogen/starch
Metabolic module: M00854

GCA_000333815.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000333815.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000333815.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_000333815.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_000333815.1 (Pathway)
Pathway: Fructose degradation
Metabolic module: MF0015

GCA_000333815.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000333815.1 (Pathway)
Pathway: Galacturonate degradation I
Metabolic module: MF0022

GCA_000333815.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000333815.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000333815.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000333815.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000333815.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000333815.1 (Pathway)
Pathway: Threonine degradation I
Metabolic module: MF0049

GCA_000333815.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000333815.1 (Pathway)
Pathway: Arginine degradation V
Metabolic module: MF0055

GCA_000333815.1 (Pathway)
Pathway: Bifidobacterium shunt
Metabolic module: MF0065

GCA_000333815.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000333815.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCA_000333815.1 (Pathway)
Pathway: Pyruvate:formate lyase
Metabolic module: MF0074

GCA_000333815.1 (Pathway)
Pathway: Lactaldehyde degradation
Metabolic module: MF0078

GCA_000333815.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000333815.1 (Pathway)
Pathway: Ethanol production I
Metabolic module: MF0090

GCA_000333815.1 (Pathway)
Pathway: Lactate production
Metabolic module: MF0092

GCA_000333815.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 0.5
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 2.6
Relative abundance (%): 0.01

GCA_000333815.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 22.8
Relative abundance (%): 0.13

GCA_000333815.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 1.8
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 2.1
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000333815.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.9
Relative abundance (%): 0