GCA_000333435.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Herbiconiux ginsengi
Comparison to close relatives: Herbiconiux oxytropis
Comparison to close relatives: Herbiconiux solani
Comparison to close relatives: Herbiconiux moechotypicola
Comparison to close relatives: Herbiconiux flava
Comparison to close relatives: Herbiconiux daphnes
Comparison to close relatives: Microterricola pindariensis
Comparison to close relatives: Microterricola viridarii
Comparison to close relatives: Protaetiibacter larvae
Comparison to close relatives: Protaetiibacter intestinalis
Comparison to close relatives: Antiquaquibacter oligotrophicus
Comparison to close relatives: Leifsonia kafniensis
Comparison to close relatives: Homoserinibacter gongjuensis
Comparison to close relatives: Microbacterium lacus
Comparison to close relatives: Leifsonia antarctica
Comparison to close relatives: Mycetocola zhujimingii
Comparison to close relatives: Rudaibacter terrae
Comparison to close relatives: Labedella phragmitis
Comparison to close relatives: Salinibacterium hongtaonis
Comparison to close relatives: Leifsonia naganoensis
Comparison to close relatives: Labedella populi
Comparison to close relatives: Galbitalea soli
Comparison to close relatives: Diaminobutyricimonas aerilata
Comparison to close relatives: Pseudolysinimonas yzui
Comparison to close relatives: Microbacterium aurum
Comparison to close relatives: Leifsonia poae
Comparison to close relatives: Microcella flavibacter
Comparison to close relatives: Cryobacterium tepidiphilum
Comparison to close relatives: Agreia pratensis
Comparison to close relatives: Leifsonia lichenia
Comparison to close relatives: Microbacterium paulum
Comparison to close relatives: Agrococcus terreus
Comparison to close relatives: Microbacterium saccharophilum
Comparison to close relatives: Marinisubtilis pacificus
Comparison to close relatives: Arenivirga flava
Comparison to close relatives: Schumannella luteola
Comparison to close relatives: Microbacterium kunmingense
Comparison to close relatives: Microbacterium hydrocarbonoxydans
Comparison to close relatives: Okibacterium fritillariae
Comparison to close relatives: Agrococcus jejuensis
Comparison to close relatives: Schumannella soli
Comparison to close relatives: Leifsonia shinshuensis
Comparison to close relatives: Leifsonia williamsii
Comparison to close relatives: Microbacterium keratanolyticum
Comparison to close relatives: Agreia bicolorata
Comparison to close relatives: Leifsonia virtsii
Comparison to close relatives: Labedella endophytica
Comparison to close relatives: Okibacterium endophyticum
Comparison to close relatives: Agrococcus carbonis
Comparison to close relatives: Salinibacterium sedimenticola
Comparison to close relatives: Herbiconiux daphne
Comparison to close relatives: Microcella pacifica
Carbon source: starch
Carbon source: dextran
CAZyme: GH13
CAZyme: GH78
CAZyme: GH38
CAZyme: GH0
CAZyme: GH116
CAZyme: GH92
CAZyme: GH39
CAZyme: GH2
CAZyme: GH25
CAZyme: GH65
CAZyme: GH33
CAZyme: GH36
CAZyme: GH16
CAZyme: GH99
CAZyme: GH18
CAZyme: GH127
CAZyme: GH28
CAZyme: GH15
CAZyme: GH3
CAZyme: GH63
CAZyme: GH14
CAZyme: GH51

GCA_000333435.1 (CAZyme)
CAZyme: GH32
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: GH6
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: GH1
Occurance: 11

GCA_000333435.1 (CAZyme)
CAZyme: GH10
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: GH23
Occurance: 7

GCA_000333435.1 (CAZyme)
CAZyme: GH91
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: GH106
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: GH4
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: GH109
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: GH95
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: GH89
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: GH31
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: GH35
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: GH29
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: GH130
Occurance: 8

GCA_000333435.1 (CAZyme)
CAZyme: GH76
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: GH152
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: GH42
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: GH19
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: GH105
Occurance: 4

GCA_000333435.1 (CAZyme)
CAZyme: GH66
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: GH154
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: GT0
Occurance: 3

GCA_000333435.1 (CAZyme)
CAZyme: GT2
Occurance: 43

GCA_000333435.1 (CAZyme)
CAZyme: GT51
Occurance: 3

GCA_000333435.1 (CAZyme)
CAZyme: GT4
Occurance: 18

GCA_000333435.1 (CAZyme)
CAZyme: GT1
Occurance: 17

GCA_000333435.1 (CAZyme)
CAZyme: GT39
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: GT20
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: GT28
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: GT26
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: GT35
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: GT5
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: PL0
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: PL33
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: CE4
Occurance: 4

GCA_000333435.1 (CAZyme)
CAZyme: CE6
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: CE14
Occurance: 10

GCA_000333435.1 (CAZyme)
CAZyme: CE9
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: CE12
Occurance: 5

GCA_000333435.1 (CAZyme)
CAZyme: CE7
Occurance: 3

GCA_000333435.1 (CAZyme)
CAZyme: CBM5
Occurance: 8

GCA_000333435.1 (CAZyme)
CAZyme: CBM6
Occurance: 4

GCA_000333435.1 (CAZyme)
CAZyme: CBM50
Occurance: 6

GCA_000333435.1 (CAZyme)
CAZyme: CBM12
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: CBM67
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: CBM38
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: CBM13
Occurance: 3

GCA_000333435.1 (CAZyme)
CAZyme: CBM48
Occurance: 9

GCA_000333435.1 (CAZyme)
CAZyme: CBM84
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: CBM51
Occurance: 2

GCA_000333435.1 (CAZyme)
CAZyme: CBM20
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: CBM2
Occurance: 5

GCA_000333435.1 (CAZyme)
CAZyme: CBM32
Occurance: 1

GCA_000333435.1 (CAZyme)
CAZyme: CBM40
Occurance: 1

GCA_000333435.1 (Pathway)
Pathway: Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate
Metabolic module: M00001

GCA_000333435.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000333435.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000333435.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000333435.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000333435.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000333435.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000333435.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000333435.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000333435.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000333435.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000333435.1 (Pathway)
Pathway: Methionine degradation
Metabolic module: M00035

GCA_000333435.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000333435.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000333435.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000333435.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000333435.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000333435.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000333435.1 (Pathway)
Pathway: C5 isoprenoid biosynthesis, non-mevalonate pathway
Metabolic module: M00096

GCA_000333435.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000333435.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000333435.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000333435.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000333435.1 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_000333435.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, bacteria
Metabolic module: M00364

GCA_000333435.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, archaea
Metabolic module: M00365

GCA_000333435.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000333435.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_000333435.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000333435.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000333435.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000333435.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCA_000333435.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCA_000333435.1 (Pathway)
Pathway: Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme
Metabolic module: M00926

GCA_000333435.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000333435.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000333435.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000333435.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000333435.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_000333435.1 (Pathway)
Pathway: Tetrahydrofolate biosynthesis, GTP => THF
Metabolic module: M00126

GCA_000333435.1 (Pathway)
Pathway: Arabinoxylan degradation
Metabolic module: MF0001

GCA_000333435.1 (Pathway)
Pathway: Starch degradation
Metabolic module: MF0005

GCA_000333435.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_000333435.1 (Pathway)
Pathway: Trehalose degradation II
Metabolic module: MF0012

GCA_000333435.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000333435.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000333435.1 (Pathway)
Pathway: Aspartate degradation II
Metabolic module: MF0029

GCA_000333435.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000333435.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000333435.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_000333435.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000333435.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000333435.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_000333435.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000333435.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000333435.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000333435.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000333435.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_000333435.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_000333435.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000333435.1 (Pathway)
Pathway: 4-aminobutyrate degradation
Metabolic module: MF0076

GCA_000333435.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000333435.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 23.6
Relative abundance (%): 0.26

GCA_000333435.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 4.3
Relative abundance (%): 0.02

GCA_000333435.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 2.5
Relative abundance (%): 0.02

GCA_000333435.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 48.9
Relative abundance (%): 0.44

GCA_000333435.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 11.7
Relative abundance (%): 0.39

GCA_000333435.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 17.3
Relative abundance (%): 0.07

GCA_000333435.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 11.7
Relative abundance (%): 0.02

GCA_000333435.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 9.8
Relative abundance (%): 0.16

GCA_000333435.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 62
Relative abundance (%): 0.67

GCA_000333435.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 51.4
Relative abundance (%): 0.42

GCA_000333435.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 1.5
Relative abundance (%): 0.01

GCA_000333435.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 58.8
Relative abundance (%): 0.2

GCA_000333435.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 40.8
Relative abundance (%): 0.32

GCA_000333435.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 74.7
Relative abundance (%): 0.3

GCA_000333435.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 18.2
Relative abundance (%): 0.46

GCA_000333435.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 1.9
Relative abundance (%): 0.07

GCA_000333435.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 12.7
Relative abundance (%): 0.07

GCA_000333435.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 13.4
Relative abundance (%): 0.32

GCA_000333435.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 1.8
Relative abundance (%): 0.06

GCA_000333435.1 (MAGs)
MAGs: no MAG matches found