GCA_000333335.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Sphingomonas oryzagri
Comparison to close relatives: Sphingomonas chungangi
Comparison to close relatives: Sphingomonas polyaromaticivorans
Comparison to close relatives: Sphingomonas naphthae
Comparison to close relatives: Sphingomonas crocodyli
Comparison to close relatives: Sphingomonas panacisoli
Comparison to close relatives: Sphingomonas spermidinifaciens
Comparison to close relatives: Sphingomonas gilva
Comparison to close relatives: Sphingomonas cavernae
Comparison to close relatives: Sphingomonas montanisoli
Comparison to close relatives: Sphingomonas japonica
Comparison to close relatives: Sphingomonas ginsenosidimutans
Comparison to close relatives: Sphingomonas yantingensis
Comparison to close relatives: Rhizorhabdus starnbergensis
Comparison to close relatives: Sphingomonas desiccabilis
Comparison to close relatives: Sphingomonas hankookensis
Comparison to close relatives: Sphingomonas hominis
Comparison to close relatives: Sphingomonas yunnanensis
Comparison to close relatives: Sphingomonas folii
Comparison to close relatives: Sphingomonas koreensis
Comparison to close relatives: Sphingomonas jeddahensis
Comparison to close relatives: Sphingomonas oligoaromativorans
Comparison to close relatives: Sphingomonas prati
Comparison to close relatives: Sphingomonas sanguinis
Comparison to close relatives: Sphingomonas paucimobilis
Comparison to close relatives: Sphingomonas aracearum
Comparison to close relatives: Sphingomonas turrisvirgatae
Comparison to close relatives: Sphingomonas panacis
Comparison to close relatives: Sphingomonas citri
Comparison to close relatives: Sphingomonas citricola
Comparison to close relatives: Sphingomonas pruni
Comparison to close relatives: Sphingomonas asaccharolytica
Comparison to close relatives: Sphingomonas dokdonensis
Comparison to close relatives: Sphingomonas palmae
Comparison to close relatives: Sphingomonas mali
Comparison to close relatives: Sphingomonas insulae
Comparison to close relatives: Sphingomonas endophytica
Comparison to close relatives: Sphingomonas sanxanigenens
Comparison to close relatives: Sphingomonas cannabina
Comparison to close relatives: Sphingomonas glacialis
Comparison to close relatives: Sphingomonas yabuuchiae
Comparison to close relatives: Sphingomonas melonis
Comparison to close relatives: Sphingomonas aquatilis
Comparison to close relatives: Sphingomonas hengshuiensis
Comparison to close relatives: Sphingomonas leidyi
Comparison to close relatives: Sphingomonas phyllosphaerae
Comparison to close relatives: Sphingomonas morindae
Comparison to close relatives: Sphingomonas roseiflava
Comparison to close relatives: Sphingomonas suaedae
Comparison to close relatives: Sphingomonas psychrotolerans
Carbon source: starch
CAZyme: GH106
CAZyme: GH13
CAZyme: GH55
CAZyme: GH6
CAZyme: GH2
CAZyme: GH3
CAZyme: GH146
CAZyme: GH92
CAZyme: GH31
CAZyme: GH43
CAZyme: GH20
CAZyme: GH74
CAZyme: GH0
CAZyme: GH65
CAZyme: GH23
CAZyme: GH28
CAZyme: GH144
CAZyme: GH18
CAZyme: GH15
CAZyme: GH4
CAZyme: GH35
CAZyme: GH37
CAZyme: GH51
CAZyme: GH142
CAZyme: GH125

GCA_000333335.1 (CAZyme)
CAZyme: GH78
Occurance: 2

GCA_000333335.1 (CAZyme)
CAZyme: GH1
Occurance: 7

GCA_000333335.1 (CAZyme)
CAZyme: GH29
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: GH27
Occurance: 2

GCA_000333335.1 (CAZyme)
CAZyme: GH5
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: GH16
Occurance: 3

GCA_000333335.1 (CAZyme)
CAZyme: GH130
Occurance: 3

GCA_000333335.1 (CAZyme)
CAZyme: GH10
Occurance: 2

GCA_000333335.1 (CAZyme)
CAZyme: GH102
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: GH19
Occurance: 3

GCA_000333335.1 (CAZyme)
CAZyme: GH76
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: GH103
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: GH77
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: GH104
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: GH39
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: GH108
Occurance: 2

GCA_000333335.1 (CAZyme)
CAZyme: GH24
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: GT2
Occurance: 35

GCA_000333335.1 (CAZyme)
CAZyme: GT4
Occurance: 28

GCA_000333335.1 (CAZyme)
CAZyme: GT13
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: GT5
Occurance: 3

GCA_000333335.1 (CAZyme)
CAZyme: GT51
Occurance: 6

GCA_000333335.1 (CAZyme)
CAZyme: GT107
Occurance: 2

GCA_000333335.1 (CAZyme)
CAZyme: GT1
Occurance: 11

GCA_000333335.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_000333335.1 (CAZyme)
CAZyme: GT26
Occurance: 3

GCA_000333335.1 (CAZyme)
CAZyme: GT0
Occurance: 2

GCA_000333335.1 (CAZyme)
CAZyme: GT21
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: GT20
Occurance: 3

GCA_000333335.1 (CAZyme)
CAZyme: PL12
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: PL0
Occurance: 2

GCA_000333335.1 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: CE14
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: CE6
Occurance: 2

GCA_000333335.1 (CAZyme)
CAZyme: CE11
Occurance: 5

GCA_000333335.1 (CAZyme)
CAZyme: CE0
Occurance: 3

GCA_000333335.1 (CAZyme)
CAZyme: CE9
Occurance: 2

GCA_000333335.1 (CAZyme)
CAZyme: CE1
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: CBM50
Occurance: 9

GCA_000333335.1 (CAZyme)
CAZyme: CBM48
Occurance: 5

GCA_000333335.1 (CAZyme)
CAZyme: CBM66
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: CBM32
Occurance: 3

GCA_000333335.1 (CAZyme)
CAZyme: CBM9
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: CBM13
Occurance: 3

GCA_000333335.1 (CAZyme)
CAZyme: CBM2
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: CBM35
Occurance: 1

GCA_000333335.1 (CAZyme)
CAZyme: CBM5
Occurance: 3

GCA_000333335.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000333335.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000333335.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000333335.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000333335.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000333335.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000333335.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000333335.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000333335.1 (Pathway)
Pathway: Glyoxylate cycle
Metabolic module: M00012

GCA_000333335.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000333335.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000333335.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000333335.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000333335.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000333335.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000333335.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000333335.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000333335.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000333335.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000333335.1 (Pathway)
Pathway: D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P
Metabolic module: M00061

GCA_000333335.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000333335.1 (Pathway)
Pathway: Phosphatidylcholine (PC) biosynthesis, PE => PC
Metabolic module: M00091

GCA_000333335.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000333335.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000333335.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000333335.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000333335.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000333335.1 (Pathway)
Pathway: Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
Metabolic module: M00123

GCA_000333335.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000333335.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000333335.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000333335.1 (Pathway)
Pathway: Assimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00531

GCA_000333335.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000333335.1 (Pathway)
Pathway: Trehalose biosynthesis, D-glucose 1P => trehalose
Metabolic module: M00565

GCA_000333335.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000333335.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000333335.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000333335.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000333335.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000333335.1 (Pathway)
Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA
Metabolic module: M00999

GCA_000333335.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000333335.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_000333335.1 (Pathway)
Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA
Metabolic module: M01036

GCA_000333335.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000333335.1 (Pathway)
Pathway: Adenine ribonucleotide degradation, AMP => Urate
Metabolic module: M00958

GCA_000333335.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000333335.1 (Pathway)
Pathway: Histidine degradation, histidine => N-formiminoglutamate => glutamate
Metabolic module: M00045

GCA_000333335.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000333335.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000333335.1 (Pathway)
Pathway: Arabinoxylan degradation
Metabolic module: MF0001

GCA_000333335.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_000333335.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_000333335.1 (Pathway)
Pathway: Trehalose degradation II
Metabolic module: MF0012

GCA_000333335.1 (Pathway)
Pathway: Tyrosine degradation I
Metabolic module: MF0026

GCA_000333335.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000333335.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000333335.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000333335.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_000333335.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000333335.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_000333335.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000333335.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000333335.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000333335.1 (Pathway)
Pathway: Histidine degradation
Metabolic module: MF0056

GCA_000333335.1 (Pathway)
Pathway: Glyoxylate bypass
Metabolic module: MF0063

GCA_000333335.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000333335.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_000333335.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000333335.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000333335.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_000333335.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000333335.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_000333335.1 (Pathway)
Pathway: Lactate production
Metabolic module: MF0092

GCA_000333335.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000333335.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 1
Relative abundance (%): 0.16

GCA_000333335.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.24

GCA_000333335.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.01

GCA_000333335.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 8.1
Relative abundance (%): 0.27

GCA_000333335.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 1.9
Relative abundance (%): 0.01

GCA_000333335.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.03

GCA_000333335.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 1.9
Relative abundance (%): 0.01

GCA_000333335.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 2
Relative abundance (%): 0.26

GCA_000333335.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 17.1
Relative abundance (%): 2.18

GCA_000333335.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 13.5
Relative abundance (%): 0.23

GCA_000333335.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.01

GCA_000333335.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 4.1
Relative abundance (%): 0.14

GCA_000333335.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 6.7
Relative abundance (%): 0.15

GCA_000333335.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 12
Relative abundance (%): 0.17

GCA_000333335.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 2.6
Relative abundance (%): 0.92

GCA_000333335.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.18

GCA_000333335.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 2.3
Relative abundance (%): 0.25

GCA_000333335.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 2.9
Relative abundance (%): 0.24

GCA_000333335.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.7
Relative abundance (%): 1.68

GCA_000333335.1 (MAGs)
MAGs: no MAG matches found