GCA_000299115.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Kordiimonas marina
Comparison to close relatives: Kordiimonas lipolytica
Comparison to close relatives: Sphingomonas gilva
Comparison to close relatives: Kiloniella majae
Comparison to close relatives: Mesorhizobium atlanticum
Comparison to close relatives: Rhizobium pisi
Comparison to close relatives: Lacibacterium aquatile
Comparison to close relatives: Ahrensia marina
Comparison to close relatives: Sphingomonas lacunae
Comparison to close relatives: Mesorhizobium comanense
Comparison to close relatives: Aliidongia dinghuensis
Comparison to close relatives: Iodidimonas nitroreducens
Comparison to close relatives: Kordiimonas gwangyangensis
Comparison to close relatives: Parvibaculum lavamentivorans
Comparison to close relatives: Kordiimonas pumila
Comparison to close relatives: Mesorhizobium shonense
Comparison to close relatives: Sphingomonas flavalba
Comparison to close relatives: Mesorhizobium wenxiniae
Comparison to close relatives: Mesorhizobium abyssinicae
Comparison to close relatives: Ensifer canadensis
Comparison to close relatives: Oricola cellulosilytica
Comparison to close relatives: Tistrella bauzanensis
Comparison to close relatives: Kordiimonas aquimaris
Comparison to close relatives: Phyllobacterium calauticae
Comparison to close relatives: Sphingomonas zeicaulis
Comparison to close relatives: Chelativorans intermedius
Comparison to close relatives: Mesorhizobium chacoense
Comparison to close relatives: Sphingomonas sanxanigenens
Comparison to close relatives: Aminobacter niigataensis
Comparison to close relatives: Phyllobacterium endophyticum
Comparison to close relatives: Aminobacter aganoensis
Comparison to close relatives: Aminobacter aminovorans
Comparison to close relatives: Salaquimonas pukyongi
Comparison to close relatives: Mesorhizobium plurifarium
Comparison to close relatives: Mesorhizobium tamadayense
Comparison to close relatives: Mesorhizobium norvegicum
Comparison to close relatives: Phyllobacterium trifolii
Comparison to close relatives: Mesorhizobium tianshanense
Comparison to close relatives: Segnochrobactrum spirostomi
Comparison to close relatives: Mesorhizobium erdmanii
Comparison to close relatives: Mesorhizobium delmotii
Comparison to close relatives: Mesorhizobium escarrei
Comparison to close relatives: Phyllobacterium loti
Comparison to close relatives: Mesorhizobium amorphae
Comparison to close relatives: Mesorhizobium muleiense
Comparison to close relatives: Mesorhizobium jarvisii
Comparison to close relatives: Dongia mobilis
Comparison to close relatives: Oricola indica
Comparison to close relatives: Ensifer alkalisoli
Comparison to close relatives: Magnetovibrio blakemorei
Comparison to close relatives: Sinorhizobium alkalisoli
CAZyme: GH13
CAZyme: GH6
CAZyme: GH28
CAZyme: GH23
CAZyme: GH1
CAZyme: GH4
CAZyme: GH103
CAZyme: GH3
CAZyme: GH0
CAZyme: GH19
CAZyme: GH43
CAZyme: GH73
CAZyme: GT13
CAZyme: GT2
CAZyme: GT51
CAZyme: GT4
CAZyme: GT1
CAZyme: GT28
CAZyme: GT81
CAZyme: GT30
CAZyme: GT9
CAZyme: GT19
CAZyme: GT32
CAZyme: GT20
CAZyme: CE4

GCA_000299115.1 (CAZyme)
CAZyme: CE12
Occurance: 2

GCA_000299115.1 (CAZyme)
CAZyme: CE11
Occurance: 1

GCA_000299115.1 (CAZyme)
CAZyme: CBM50
Occurance: 2

GCA_000299115.1 (CAZyme)
CAZyme: CBM13
Occurance: 1

GCA_000299115.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_000299115.1 (CAZyme)
CAZyme: CBM5
Occurance: 1

GCA_000299115.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_000299115.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000299115.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000299115.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000299115.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000299115.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000299115.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000299115.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000299115.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000299115.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000299115.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000299115.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000299115.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000299115.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000299115.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000299115.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000299115.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000299115.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000299115.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000299115.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000299115.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000299115.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000299115.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000299115.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000299115.1 (Pathway)
Pathway: Betaine metabolism, animals, betaine => glycine
Metabolic module: M00974

GCA_000299115.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000299115.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000299115.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000299115.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_000299115.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000299115.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_000299115.1 (Pathway)
Pathway: C1-unit interconversion, prokaryotes
Metabolic module: M00140

GCA_000299115.1 (Pathway)
Pathway: Xylose degradation
Metabolic module: MF0021

GCA_000299115.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000299115.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000299115.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000299115.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000299115.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000299115.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000299115.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000299115.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000299115.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000299115.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 1.6
Relative abundance (%): 0.2

GCA_000299115.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 39
Relative abundance (%): 0.72

GCA_000299115.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000299115.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0

GCA_000299115.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 35.3
Relative abundance (%): 0.65

GCA_000299115.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.06

GCA_000299115.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.7
Relative abundance (%): 0

GCA_000299115.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000299115.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0.6
Relative abundance (%): 0.01

GCA_000299115.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 3.9
Relative abundance (%): 0.17

GCA_000299115.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.8
Relative abundance (%): 0

GCA_000299115.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 2.8
Relative abundance (%): 0.08

GCA_000299115.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000299115.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000299115.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.07

GCA_000299115.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_000299115.1 (MAGs)
MAGs: no MAG matches found