GCA_000299095.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Neorhizobium tomejilense
Comparison to close relatives: Mesorhizobium atlanticum
Comparison to close relatives: Mesorhizobium comanense
Comparison to close relatives: Endobacterium cereale
Comparison to close relatives: Mesorhizobium wenxiniae
Comparison to close relatives: Ensifer canadensis
Comparison to close relatives: Phyllobacterium calauticae
Comparison to close relatives: Mesorhizobium tianshanense
Comparison to close relatives: Shinella zoogloeoides
Comparison to close relatives: Mesorhizobium chacoense
Comparison to close relatives: Tistrella bauzanensis
Comparison to close relatives: Mesorhizobium loti
Comparison to close relatives: Mesorhizobium norvegicum
Comparison to close relatives: Mesorhizobium neociceri
Comparison to close relatives: Mesorhizobium muleiense
Comparison to close relatives: Mesorhizobium amorphae
Comparison to close relatives: Aminobacter aminovorans
Comparison to close relatives: Hoeflea anabaenae
Comparison to close relatives: Brucella grignonensis
Comparison to close relatives: Mesorhizobium tamadayense
Comparison to close relatives: Rhizobium favelukesii
Comparison to close relatives: Mesorhizobium erdmanii
Comparison to close relatives: Aminobacter niigataensis
Comparison to close relatives: Rhizobium lentis
Comparison to close relatives: Aminobacter aganoensis
Comparison to close relatives: Mesorhizobium jarvisii
Comparison to close relatives: Rhizobium rhizogenes
Comparison to close relatives: Rhizobium lusitanum
Comparison to close relatives: Pararhizobium giardinii
Comparison to close relatives: Rhizobium dioscoreae
Comparison to close relatives: Rhizobium pisi
Comparison to close relatives: Ensifer alkalisoli
Comparison to close relatives: Pseudohoeflea suaedae
Comparison to close relatives: Rhizobium anhuiense
Comparison to close relatives: Rhizobium ruizarguesonis
Comparison to close relatives: Rhizobium laguerreae
Comparison to close relatives: Rhizobium leguminosarum
Comparison to close relatives: Shinella lacus
Comparison to close relatives: Rhizobium etli
Comparison to close relatives: Rhizobium metallidurans
Comparison to close relatives: Rhizobium beringeri
Comparison to close relatives: Mesorhizobium alhagi
Comparison to close relatives: Brucella oryzae
Comparison to close relatives: Rhizobium johnstonii
Comparison to close relatives: Rhizobium brockwellii
Comparison to close relatives: Oricola indica
Comparison to close relatives: Ferirhizobium litorale
Comparison to close relatives: Bartonella apis
Comparison to close relatives: Rhizobium aethiopicum
Comparison to close relatives: Paenochrobactrum glaciei
Comparison to close relatives: Rhizobium giardinii
Comparison to close relatives: Sinorhizobium alkalisoli
CAZyme: GH13
CAZyme: GH23
CAZyme: GH65
CAZyme: GH28
CAZyme: GH73
CAZyme: GH0
CAZyme: GH103
CAZyme: GH16
CAZyme: GH3
CAZyme: GT13
CAZyme: GT51
CAZyme: GT4
CAZyme: GT41
CAZyme: GT1
CAZyme: GT28
CAZyme: GT83
CAZyme: GT2
CAZyme: GT21
CAZyme: GT19
CAZyme: GT0
CAZyme: GT9
CAZyme: GT17
CAZyme: GT30
CAZyme: CE11

GCA_000299095.1 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_000299095.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_000299095.1 (CAZyme)
CAZyme: CBM50
Occurance: 2

GCA_000299095.1 (CAZyme)
CAZyme: CBM20
Occurance: 1

GCA_000299095.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_000299095.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_000299095.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000299095.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000299095.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000299095.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000299095.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000299095.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000299095.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000299095.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000299095.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000299095.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000299095.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000299095.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000299095.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000299095.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000299095.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000299095.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000299095.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000299095.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000299095.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000299095.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000299095.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000299095.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), light
Metabolic module: M00169

GCA_000299095.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000299095.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000299095.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000299095.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000299095.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_000299095.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000299095.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_000299095.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000299095.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000299095.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000299095.1 (Pathway)
Pathway: C1-unit interconversion, prokaryotes
Metabolic module: M00140

GCA_000299095.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000299095.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000299095.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000299095.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_000299095.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000299095.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000299095.1 (Pathway)
Pathway: Glycerol degradation II
Metabolic module: MF0061

GCA_000299095.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000299095.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000299095.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0.6
Relative abundance (%): 0.48

GCA_000299095.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000299095.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000299095.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 2.5
Relative abundance (%): 0.04

GCA_000299095.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 51
Relative abundance (%): 1.66

GCA_000299095.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_000299095.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.02

GCA_000299095.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 58.5
Relative abundance (%): 6.38

GCA_000299095.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.05

GCA_000299095.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.1

GCA_000299095.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.02

GCA_000299095.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.01

GCA_000299095.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 6.6
Relative abundance (%): 0.24

GCA_000299095.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 2.1
Relative abundance (%): 0.01

GCA_000299095.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 8.6
Relative abundance (%): 1.61

GCA_000299095.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.01

GCA_000299095.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.03

GCA_000299095.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.04

GCA_000299095.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.01

GCA_000299095.1 (MAGs)
MAGs: no MAG matches found