GCA_000296795.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Thermodesulfitimonas autotrophica
Comparison to close relatives: Thermovirga lienii
Comparison to close relatives: Moorella thermoacetica
Comparison to close relatives: Miltoncostaea oceani
Comparison to close relatives: Lactivibrio alcoholicus
Comparison to close relatives: Lentzea albidocapillata subsp. albidocapillata
Comparison to close relatives: Syntrophus aciditrophicus
Comparison to close relatives: Anatilimnocola aggregata
Comparison to close relatives: Kiritimatiella glycovorans
Comparison to close relatives: Methylococcus mesophilus
Comparison to close relatives: Syntrophus gentianae
Comparison to close relatives: Geomonas bemidjiensis
Comparison to close relatives: Syntrophus buswellii
Comparison to close relatives: Desulfomonile limimaris
Comparison to close relatives: Anaeromyxobacter paludicola
Comparison to close relatives: Anaeromyxobacter dehalogenans
Comparison to close relatives: Methylococcus geothermalis
Comparison to close relatives: Rubrobacter xylanophilus
Comparison to close relatives: Geoalkalibacter ferrihydriticus
Comparison to close relatives: Syntrophotalea venetiana
Comparison to close relatives: Pelobacter propionicus
Comparison to close relatives: Geobacter sulfurreducens subsp. sulfurreducens
Comparison to close relatives: Desulfobacca acetoxidans
Comparison to close relatives: Desulfuromonas acetoxidans
Comparison to close relatives: Anaeromyxobacter diazotrophicus
Comparison to close relatives: Geotalea uraniireducens
Comparison to close relatives: Geobacter metallireducens
Comparison to close relatives: Geobacter benzoatilyticus
Comparison to close relatives: Geobacter grbiciae
Comparison to close relatives: Solirubrobacter soli
Comparison to close relatives: Rubrobacter calidifluminis
Comparison to close relatives: Desulfolithobacter dissulfuricans
Comparison to close relatives: Rubrobacter naiadicus
Comparison to close relatives: Thermaerobacter marianensis
Comparison to close relatives: Syntrophotalea carbinolica
Comparison to close relatives: Geobacter sulfurreducens subsp. ethanolicus
Comparison to close relatives: Rubrobacter taiwanensis
Comparison to close relatives: Syntrophotalea acetylenica
Comparison to close relatives: Anaeromyxobacter oryzae
Comparison to close relatives: Calditerricola yamamurae
Comparison to close relatives: Geobacter soli
Comparison to close relatives: Vicinamibacter silvestris
Comparison to close relatives: Desulforhabdus amnigena
Comparison to close relatives: Geobacter anodireducens
Comparison to close relatives: Conexibacter woesei
Comparison to close relatives: Conexibacter arvalis
Comparison to close relatives: Geoalkalibacter subterraneus
Comparison to close relatives: Syntrophotalea acetylenivorans
Comparison to close relatives: Desulfuromonas thiophila
Comparison to close relatives: Thermosynergistes pyruvativorans
Comparison to close relatives: Geobacter sulfurreducens
Comparison to close relatives: Lentzea albidocapillata
Comparison to close relatives: Citrifermentans bemidjiense
Carbon source: starch
CAZyme: GH13
CAZyme: GH43
CAZyme: GH6
CAZyme: GH57
CAZyme: GH15
CAZyme: GH18
CAZyme: GH0
CAZyme: GH133
CAZyme: GH74
CAZyme: GH19
CAZyme: GH28
CAZyme: GH20
CAZyme: GH154
CAZyme: GH77
CAZyme: GH73
CAZyme: GH5
CAZyme: GH23
CAZyme: GH102
CAZyme: GT2
CAZyme: GT13
CAZyme: GT1
CAZyme: GT4

GCA_000296795.1 (CAZyme)
CAZyme: GT35
Occurance: 2

GCA_000296795.1 (CAZyme)
CAZyme: GT83
Occurance: 1

GCA_000296795.1 (CAZyme)
CAZyme: GT9
Occurance: 7

GCA_000296795.1 (CAZyme)
CAZyme: GT20
Occurance: 3

GCA_000296795.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_000296795.1 (CAZyme)
CAZyme: GT5
Occurance: 3

GCA_000296795.1 (CAZyme)
CAZyme: GT26
Occurance: 4

GCA_000296795.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_000296795.1 (CAZyme)
CAZyme: GT30
Occurance: 2

GCA_000296795.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_000296795.1 (CAZyme)
CAZyme: GT0
Occurance: 3

GCA_000296795.1 (CAZyme)
CAZyme: GT51
Occurance: 1

GCA_000296795.1 (CAZyme)
CAZyme: PL12
Occurance: 2

GCA_000296795.1 (CAZyme)
CAZyme: PL0
Occurance: 2

GCA_000296795.1 (CAZyme)
CAZyme: CE11
Occurance: 15

GCA_000296795.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_000296795.1 (CAZyme)
CAZyme: CE14
Occurance: 2

GCA_000296795.1 (CAZyme)
CAZyme: CBM50
Occurance: 15

GCA_000296795.1 (CAZyme)
CAZyme: CBM48
Occurance: 5

GCA_000296795.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_000296795.1 (CAZyme)
CAZyme: CBM32
Occurance: 1

GCA_000296795.1 (CAZyme)
CAZyme: CBM13
Occurance: 3

GCA_000296795.1 (CAZyme)
CAZyme: CBM20
Occurance: 1

GCA_000296795.1 (CAZyme)
CAZyme: CBM2
Occurance: 1

GCA_000296795.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000296795.1 (CAZyme)
CAZyme: CBM66
Occurance: 2

GCA_000296795.1 (Pathway)
Pathway: Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate
Metabolic module: M00001

GCA_000296795.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000296795.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000296795.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000296795.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000296795.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000296795.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000296795.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000296795.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000296795.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000296795.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000296795.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000296795.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000296795.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000296795.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000296795.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000296795.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000296795.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000296795.1 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_000296795.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000296795.1 (Pathway)
Pathway: Phosphatidylcholine (PC) biosynthesis, PE => PC
Metabolic module: M00091

GCA_000296795.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000296795.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000296795.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000296795.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_000296795.1 (Pathway)
Pathway: Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
Metabolic module: M00123

GCA_000296795.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000296795.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000296795.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000296795.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCA_000296795.1 (Pathway)
Pathway: Formaldehyde assimilation, ribulose monophosphate pathway
Metabolic module: M00345

GCA_000296795.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000296795.1 (Pathway)
Pathway: Dissimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00530

GCA_000296795.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000296795.1 (Pathway)
Pathway: Trehalose biosynthesis, D-glucose 1P => trehalose
Metabolic module: M00565

GCA_000296795.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000296795.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000296795.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000296795.1 (Pathway)
Pathway: Heme biosynthesis, archaea, siroheme => heme
Metabolic module: M00847

GCA_000296795.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000296795.1 (Pathway)
Pathway: Menaquinone biosynthesis, futalosine pathway
Metabolic module: M00930

GCA_000296795.1 (Pathway)
Pathway: Anammox, nitrite + ammonia => nitrogen
Metabolic module: M00973

GCA_000296795.1 (Pathway)
Pathway: Sulfur reduction, sulfur => sulfide
Metabolic module: M00986

GCA_000296795.1 (Pathway)
Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA
Metabolic module: M00999

GCA_000296795.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000296795.1 (Pathway)
Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf
Metabolic module: M01004

GCA_000296795.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_000296795.1 (Pathway)
Pathway: Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
Metabolic module: M00896

GCA_000296795.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_000296795.1 (Pathway)
Pathway: Glycogen biosynthesis, glucose-1P => glycogen/starch
Metabolic module: M00854

GCA_000296795.1 (Pathway)
Pathway: Pentose phosphate pathway (Pentose phosphate cycle)
Metabolic module: M00004

GCA_000296795.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000296795.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000296795.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000296795.1 (Pathway)
Pathway: De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP
Metabolic module: M00051

GCA_000296795.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000296795.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000296795.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000296795.1 (Pathway)
Pathway: Aspartate degradation II
Metabolic module: MF0029

GCA_000296795.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000296795.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000296795.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_000296795.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_000296795.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000296795.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000296795.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000296795.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_000296795.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000296795.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCA_000296795.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000296795.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000296795.1 (Pathway)
Pathway: Nitrate reduction (dissimilatory)
Metabolic module: MF0101

GCA_000296795.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000296795.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.03

GCA_000296795.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000296795.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.19

GCA_000296795.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000296795.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0

GCA_000296795.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_000296795.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000296795.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000296795.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.01

GCA_000296795.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000296795.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 1.2
Relative abundance (%): 0.15

GCA_000296795.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0.3
Relative abundance (%): 34.59

GCA_000296795.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000296795.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000296795.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000296795.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000296795.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000296795.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000296795.1 (MAGs)
MAGs: no MAG matches found