GCA_000263395.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Pseudomonas decontaminans
Comparison to close relatives: Pseudomonas stutzeri
Comparison to close relatives: Pseudomonas marianensis
Comparison to close relatives: Pseudomonas solani
Comparison to close relatives: Pseudomonas tohonis
Comparison to close relatives: Pseudomonas alcaliphila
Comparison to close relatives: Pseudomonas nitrititolerans
Comparison to close relatives: Pseudomonas toyotomiensis
Comparison to close relatives: Pseudomonas chengduensis
Comparison to close relatives: Pseudomonas hydrolytica
Comparison to close relatives: Pseudomonas khazarica
Comparison to close relatives: Pseudomonas kunmingensis
Comparison to close relatives: Pseudomonas mendocina
Comparison to close relatives: Pseudomonas muyukensis
Comparison to close relatives: Pseudomonas asiatica
Comparison to close relatives: Pseudomonas fakonensis
Comparison to close relatives: Pseudomonas xanthosomatis
Comparison to close relatives: Pseudomonas xantholysinigenes
Comparison to close relatives: Pseudomonas sichuanensis
Comparison to close relatives: Pseudomonas inefficax
Comparison to close relatives: Pseudomonas monteilii
Comparison to close relatives: Pseudomonas juntendi
Comparison to close relatives: Pseudomonas peradeniyensis
Comparison to close relatives: Pseudomonas flavescens
Comparison to close relatives: Pseudomonas mosselii
Comparison to close relatives: Pseudomonas hamedanensis
Comparison to close relatives: Pseudomonas urmiensis
Comparison to close relatives: Pseudomonas kermanshahensis
Comparison to close relatives: Pseudomonas aphyarum
Comparison to close relatives: Pseudomonas entomophila
Comparison to close relatives: Pseudomonas farsensis
Comparison to close relatives: Pseudomonas punonensis
Comparison to close relatives: Pseudomonas balearica
Comparison to close relatives: Pseudomonas paralcaligenes
Comparison to close relatives: Pseudomonas alcaligenes
Comparison to close relatives: Pseudomonas rustica
Comparison to close relatives: Pseudomonas zeae
Comparison to close relatives: Pseudomonas germanica
Comparison to close relatives: Pseudomonas khorasanensis
Comparison to close relatives: Pseudomonas shirazensis
Comparison to close relatives: Pseudomonas benzenivorans
Comparison to close relatives: Pseudomonas defluvii
Comparison to close relatives: Pseudomonas siliginis
Comparison to close relatives: Pseudomonas oligotrophica
Comparison to close relatives: Pseudomonas tensinigenes
Comparison to close relatives: Pseudomonas triticicola
Comparison to close relatives: Pseudomonas vanderleydeniana
Comparison to close relatives: Pseudomonas crudilactis
Comparison to close relatives: Pseudomonas huaxiensis
Comparison to close relatives: Pseudomonas maumuensis
Comparison to close relatives: Stutzerimonas stutzeri
Comparison to close relatives: Stutzerimonas kunmingensis
Comparison to close relatives: Stutzerimonas chloritidismutans
Comparison to close relatives: Stutzerimonas balearica
Comparison to close relatives: Stutzerimonas nitrititolerans
Carbon source: starch
Carbon source: cellulose
CAZyme: GH23
CAZyme: GH13
CAZyme: GH6
CAZyme: GH0
CAZyme: GH3
CAZyme: GH5
CAZyme: GH19
CAZyme: GH77
CAZyme: GH65
CAZyme: GH28
CAZyme: GH73
CAZyme: GH101
CAZyme: GH37
CAZyme: GH36
CAZyme: GH39
CAZyme: GH71
CAZyme: GH103
CAZyme: GH135
CAZyme: GH1

GCA_000263395.1 (CAZyme)
CAZyme: GH114
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: GT0
Occurance: 2

GCA_000263395.1 (CAZyme)
CAZyme: GT13
Occurance: 2

GCA_000263395.1 (CAZyme)
CAZyme: GT2
Occurance: 18

GCA_000263395.1 (CAZyme)
CAZyme: GT35
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: GT51
Occurance: 5

GCA_000263395.1 (CAZyme)
CAZyme: GT4
Occurance: 27

GCA_000263395.1 (CAZyme)
CAZyme: GT22
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: GT5
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: GT1
Occurance: 7

GCA_000263395.1 (CAZyme)
CAZyme: GT28
Occurance: 5

GCA_000263395.1 (CAZyme)
CAZyme: GT9
Occurance: 3

GCA_000263395.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: GT104
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: GT26
Occurance: 2

GCA_000263395.1 (CAZyme)
CAZyme: PL0
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: CE16
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: CE0
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: CE14
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: CE11
Occurance: 2

GCA_000263395.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: CBM20
Occurance: 2

GCA_000263395.1 (CAZyme)
CAZyme: CBM41
Occurance: 7

GCA_000263395.1 (CAZyme)
CAZyme: CBM50
Occurance: 18

GCA_000263395.1 (CAZyme)
CAZyme: CBM48
Occurance: 5

GCA_000263395.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_000263395.1 (CAZyme)
CAZyme: CBM5
Occurance: 3

GCA_000263395.1 (CAZyme)
CAZyme: CBM51
Occurance: 2

GCA_000263395.1 (CAZyme)
CAZyme: CBM56
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_000263395.1 (CAZyme)
CAZyme: CBM2
Occurance: 1

GCA_000263395.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000263395.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000263395.1 (Pathway)
Pathway: Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Metabolic module: M00008

GCA_000263395.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000263395.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000263395.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000263395.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000263395.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000263395.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000263395.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000263395.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000263395.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000263395.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000263395.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000263395.1 (Pathway)
Pathway: Ectoine biosynthesis, aspartate => ectoine
Metabolic module: M00033

GCA_000263395.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000263395.1 (Pathway)
Pathway: Tyrosine degradation, tyrosine => homogentisate
Metabolic module: M00044

GCA_000263395.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000263395.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000263395.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000263395.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000263395.1 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_000263395.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000263395.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000263395.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000263395.1 (Pathway)
Pathway: C5 isoprenoid biosynthesis, non-mevalonate pathway
Metabolic module: M00096

GCA_000263395.1 (Pathway)
Pathway: Acylglycerol degradation
Metabolic module: M00098

GCA_000263395.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000263395.1 (Pathway)
Pathway: Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol
Metabolic module: M00117

GCA_000263395.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000263395.1 (Pathway)
Pathway: Pantothenate biosynthesis, valine/L-aspartate => pantothenate
Metabolic module: M00119

GCA_000263395.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000263395.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000263395.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_000263395.1 (Pathway)
Pathway: Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
Metabolic module: M00123

GCA_000263395.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P
Metabolic module: M00124

GCA_000263395.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000263395.1 (Pathway)
Pathway: Polyamine biosynthesis, arginine => ornithine => putrescine
Metabolic module: M00134

GCA_000263395.1 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_000263395.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000263395.1 (Pathway)
Pathway: Cytochrome bd ubiquinol oxidase
Metabolic module: M00153

GCA_000263395.1 (Pathway)
Pathway: Cytochrome c oxidase, cbb3-type
Metabolic module: M00156

GCA_000263395.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000263395.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, bacteria
Metabolic module: M00364

GCA_000263395.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000263395.1 (Pathway)
Pathway: Denitrification, nitrate => nitrogen
Metabolic module: M00529

GCA_000263395.1 (Pathway)
Pathway: Dissimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00530

GCA_000263395.1 (Pathway)
Pathway: Assimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00531

GCA_000263395.1 (Pathway)
Pathway: Benzene degradation, benzene => catechol
Metabolic module: M00548

GCA_000263395.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000263395.1 (Pathway)
Pathway: Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol
Metabolic module: M00551

GCA_000263395.1 (Pathway)
Pathway: Catechol ortho-cleavage, catechol => 3-oxoadipate
Metabolic module: M00568

GCA_000263395.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_000263395.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000263395.1 (Pathway)
Pathway: Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP
Metabolic module: M00572

GCA_000263395.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_000263395.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000263395.1 (Pathway)
Pathway: Imipenem resistance, repression of porin OprD
Metabolic module: M00745

GCA_000263395.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000263395.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000263395.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000263395.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000263395.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000263395.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc
Metabolic module: M00996

GCA_000263395.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000263395.1 (Pathway)
Pathway: UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc
Metabolic module: M01009

GCA_000263395.1 (Pathway)
Pathway: UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA
Metabolic module: M01014

GCA_000263395.1 (Pathway)
Pathway: GDP-6-deoxy-Tal biosynthesis, GDP-Man => GDP-6-deoxy-Tal
Metabolic module: M01019

GCA_000263395.1 (Pathway)
Pathway: Methylcitrate cycle
Metabolic module: M00982

GCA_000263395.1 (Pathway)
Pathway: Guanine ribonucleotide degradation, GMP => Urate
Metabolic module: M00959

GCA_000263395.1 (Pathway)
Pathway: Adenine ribonucleotide degradation, AMP => Urate
Metabolic module: M00958

GCA_000263395.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_000263395.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000263395.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_000263395.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_000263395.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000263395.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000263395.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => HPP => tyrosine
Metabolic module: M00025

GCA_000263395.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000263395.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000263395.1 (Pathway)
Pathway: Siroheme biosynthesis, glutamyl-tRNA => siroheme
Metabolic module: M00846

GCA_000263395.1 (Pathway)
Pathway: Trehalose degradation II
Metabolic module: MF0012

GCA_000263395.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000263395.1 (Pathway)
Pathway: Aspartate degradation II
Metabolic module: MF0029

GCA_000263395.1 (Pathway)
Pathway: Alanine degradation I
Metabolic module: MF0033

GCA_000263395.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000263395.1 (Pathway)
Pathway: Isoleucine degradation
Metabolic module: MF0036

GCA_000263395.1 (Pathway)
Pathway: Leucine degradation
Metabolic module: MF0037

GCA_000263395.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_000263395.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000263395.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000263395.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000263395.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000263395.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000263395.1 (Pathway)
Pathway: Arginine degradation IV
Metabolic module: MF0054

GCA_000263395.1 (Pathway)
Pathway: Arginine degradation V
Metabolic module: MF0055

GCA_000263395.1 (Pathway)
Pathway: Entner-Doudoroff pathway
Metabolic module: MF0066

GCA_000263395.1 (Pathway)
Pathway: Glycolysis (preparatory phase)
Metabolic module: MF0067

GCA_000263395.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_000263395.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000263395.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000263395.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000263395.1 (Pathway)
Pathway: 4-aminobutyrate degradation
Metabolic module: MF0076

GCA_000263395.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000263395.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_000263395.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 28.9
Relative abundance (%): 0.64

GCA_000263395.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 8.9
Relative abundance (%): 0.11

GCA_000263395.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 16.5
Relative abundance (%): 1.43

GCA_000263395.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 42.8
Relative abundance (%): 2.8

GCA_000263395.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 42.1
Relative abundance (%): 1.02

GCA_000263395.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 27.3
Relative abundance (%): 0.16

GCA_000263395.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 16
Relative abundance (%): 0.34

GCA_000263395.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 25.7
Relative abundance (%): 0.22

GCA_000263395.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 51.4
Relative abundance (%): 2.12

GCA_000263395.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 38.6
Relative abundance (%): 0.89

GCA_000263395.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 6.3
Relative abundance (%): 0.41

GCA_000263395.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 43.6
Relative abundance (%): 0.25

GCA_000263395.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 59.7
Relative abundance (%): 0.49

GCA_000263395.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 60.6
Relative abundance (%): 7.41

GCA_000263395.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 34.4
Relative abundance (%): 0.66

GCA_000263395.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 18.5
Relative abundance (%): 6.75

GCA_000263395.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 15
Relative abundance (%): 2.26

GCA_000263395.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 49.6
Relative abundance (%): 0.5

GCA_000263395.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 11.6
Relative abundance (%): 0.42

GCA_000263395.1 (MAGs)
MAGs: no MAG matches found