GCA_000227525.2
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Thiorhodospira sibirica
Comparison to close relatives: Thioprofundum hispidum
Comparison to close relatives: Maricurvus nonylphenolicus
Comparison to close relatives: Pseudomonas benzenivorans
Comparison to close relatives: Alkalimarinus coralli
Comparison to close relatives: Neptunomonas concharum
Comparison to close relatives: Pseudomonas urmiensis
Comparison to close relatives: Marinobacterium stanieri
Comparison to close relatives: Pseudomonas sichuanensis
Comparison to close relatives: Microbulbifer flavimaris
Comparison to close relatives: Pseudomonas muyukensis
Comparison to close relatives: Pseudomonas triticicola
Comparison to close relatives: Pseudomonas protegens
Comparison to close relatives: Pseudomonas gozinkensis
Comparison to close relatives: Pseudomonas iranensis
Comparison to close relatives: Pseudomonas leptonychotis
Comparison to close relatives: Pseudomonas cremoris
Comparison to close relatives: Pseudomonas asgharzadehiana
Comparison to close relatives: Pseudomonas boanensis
Comparison to close relatives: Pseudomonas tritici
Comparison to close relatives: Pseudomonas azadiae
Comparison to close relatives: Neptuniibacter victor
Comparison to close relatives: Pseudomonas poae
Comparison to close relatives: Pseudomonas hormoni
Comparison to close relatives: Pseudomonas lurida
Comparison to close relatives: Pseudomonas trivialis
Comparison to close relatives: Pseudomonas pergaminensis
Comparison to close relatives: Pseudomonas salmasensis
Comparison to close relatives: Pseudomonas khavaziana
Comparison to close relatives: Pseudomonas shahriarae
Comparison to close relatives: Aestuariirhabdus haliotis
Comparison to close relatives: Motiliproteus coralliicola
Comparison to close relatives: Halopseudomonas sabulinigri
Comparison to close relatives: Pseudomonas prosekii
Comparison to close relatives: Neptunomonas qingdaonensis
Comparison to close relatives: Amphritea pacifica
Comparison to close relatives: Pseudomonas danubii
Comparison to close relatives: Pseudomonas asiatica
Comparison to close relatives: Pseudomonas juntendi
Comparison to close relatives: Neptunomonas acidivorans
Comparison to close relatives: Neptuniibacter caesariensis
Comparison to close relatives: Microbulbifer guangxiensis
Comparison to close relatives: Pseudomonas paralactis
Comparison to close relatives: Pseudomonas lactis
Comparison to close relatives: Pseudomonas kielensis
Comparison to close relatives: Pseudomonas balearica
Comparison to close relatives: Pseudomonas silesiensis
Comparison to close relatives: Bermanella marisrubri
Comparison to close relatives: Neptunomonas japonica
Comparison to close relatives: Pseudomonas idahonensis
Comparison to close relatives: Stutzerimonas balearica
CAZyme: GH13
CAZyme: GH6
CAZyme: GH65
CAZyme: GH28
CAZyme: GH23
CAZyme: GH36
CAZyme: GH1
CAZyme: GH63
CAZyme: GH71
CAZyme: GH135
CAZyme: GH0
CAZyme: GH3
CAZyme: GH16
CAZyme: GH103
CAZyme: GH43
CAZyme: GH73
CAZyme: GH114
CAZyme: GT13
CAZyme: GT51
CAZyme: GT4
CAZyme: GT2
CAZyme: GT22
CAZyme: GT83
CAZyme: GT1
CAZyme: GT0

GCA_000227525.2 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_000227525.2 (CAZyme)
CAZyme: GT9
Occurance: 3

GCA_000227525.2 (CAZyme)
CAZyme: GT30
Occurance: 2

GCA_000227525.2 (CAZyme)
CAZyme: GT81
Occurance: 1

GCA_000227525.2 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_000227525.2 (CAZyme)
CAZyme: GT55
Occurance: 1

GCA_000227525.2 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_000227525.2 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_000227525.2 (CAZyme)
CAZyme: CE4
Occurance: 2

GCA_000227525.2 (CAZyme)
CAZyme: CE11
Occurance: 1

GCA_000227525.2 (CAZyme)
CAZyme: CBM20
Occurance: 2

GCA_000227525.2 (CAZyme)
CAZyme: CBM50
Occurance: 8

GCA_000227525.2 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_000227525.2 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_000227525.2 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000227525.2 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_000227525.2 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000227525.2 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000227525.2 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000227525.2 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000227525.2 (Pathway)
Pathway: Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Metabolic module: M00008

GCA_000227525.2 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000227525.2 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000227525.2 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000227525.2 (Pathway)
Pathway: Glyoxylate cycle
Metabolic module: M00012

GCA_000227525.2 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000227525.2 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000227525.2 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000227525.2 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000227525.2 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000227525.2 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000227525.2 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000227525.2 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000227525.2 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000227525.2 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000227525.2 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000227525.2 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000227525.2 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000227525.2 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_000227525.2 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000227525.2 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000227525.2 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000227525.2 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000227525.2 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000227525.2 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000227525.2 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000227525.2 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000227525.2 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_000227525.2 (Pathway)
Pathway: Fumarate reductase, prokaryotes
Metabolic module: M00150

GCA_000227525.2 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000227525.2 (Pathway)
Pathway: Cytochrome c oxidase, cbb3-type
Metabolic module: M00156

GCA_000227525.2 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000227525.2 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000227525.2 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000227525.2 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000227525.2 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_000227525.2 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000227525.2 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000227525.2 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000227525.2 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000227525.2 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000227525.2 (Pathway)
Pathway: Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate
Metabolic module: M00948

GCA_000227525.2 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000227525.2 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_000227525.2 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000227525.2 (Pathway)
Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA
Metabolic module: M00999

GCA_000227525.2 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000227525.2 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_000227525.2 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000227525.2 (Pathway)
Pathway: Guanine ribonucleotide degradation, GMP => Urate
Metabolic module: M00959

GCA_000227525.2 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_000227525.2 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000227525.2 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000227525.2 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000227525.2 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000227525.2 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000227525.2 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000227525.2 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000227525.2 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000227525.2 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000227525.2 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000227525.2 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000227525.2 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_000227525.2 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000227525.2 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000227525.2 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000227525.2 (Pathway)
Pathway: Glycerol degradation II
Metabolic module: MF0061

GCA_000227525.2 (Pathway)
Pathway: Glyoxylate bypass
Metabolic module: MF0063

GCA_000227525.2 (Pathway)
Pathway: Entner-Doudoroff pathway
Metabolic module: MF0066

GCA_000227525.2 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000227525.2 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000227525.2 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000227525.2 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_000227525.2 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000227525.2 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000227525.2 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000227525.2 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000227525.2 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 1
Relative abundance (%): 0.02

GCA_000227525.2 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 27.9
Relative abundance (%): 0.25

GCA_000227525.2 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0

GCA_000227525.2 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000227525.2 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 31
Relative abundance (%): 0.26

GCA_000227525.2 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.12

GCA_000227525.2 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.01

GCA_000227525.2 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000227525.2 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.01

GCA_000227525.2 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0.6
Relative abundance (%): 0.04

GCA_000227525.2 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.8
Relative abundance (%): 0

GCA_000227525.2 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 2
Relative abundance (%): 0.02

GCA_000227525.2 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000227525.2 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000227525.2 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.02

GCA_000227525.2 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000227525.2 (MAGs)
MAGs: GCA_011524705.1_ASM1152470v1_genomic.fna
Ecosystem: Coral_(Coscinoderma_matthewsi)