GCA_000222855.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Klebsiella pneumoniae subsp. pneumoniae
Comparison to close relatives: Tolumonas lignilytica
Comparison to close relatives: Pseudaeromonas sharmana
Comparison to close relatives: Sodalis praecaptivus
Comparison to close relatives: Frischella japonica
Comparison to close relatives: Anaerobiospirillum succiniciproducens
Comparison to close relatives: Mergibacter septicus
Comparison to close relatives: Gilliamella apicola
Comparison to close relatives: Aeromonas tecta
Comparison to close relatives: Kosakonia quasisacchari
Comparison to close relatives: Cronobacter muytjensii
Comparison to close relatives: Anaerobiospirillum thomasii
Comparison to close relatives: Pectobacterium versatile
Comparison to close relatives: Oceanisphaera arctica
Comparison to close relatives: Tolumonas auensis
Comparison to close relatives: Cronobacter malonaticus
Comparison to close relatives: Oceanimonas smirnovii
Comparison to close relatives: Klebsiella spallanzanii
Comparison to close relatives: Klebsiella pasteurii
Comparison to close relatives: Pectobacterium brasiliense
Comparison to close relatives: Shigella sonnei
Comparison to close relatives: Enterobacter quasihormaechei
Comparison to close relatives: Symbiopectobacterium purcellii
Comparison to close relatives: Yersinia canariae
Comparison to close relatives: Aeromonas schubertii
Comparison to close relatives: Succinatimonas hippei
Comparison to close relatives: Serratia inhibens
Comparison to close relatives: Cronobacter condimenti
Comparison to close relatives: Veronia pacifica
Comparison to close relatives: Pectobacterium atrosepticum
Comparison to close relatives: Aeromonas bivalvium
Comparison to close relatives: Enterobacter hormaechei subsp. xiangfangensis
Comparison to close relatives: Serratia liquefaciens
Comparison to close relatives: Paraphotobacterium marinum
Comparison to close relatives: Enterobacter hormaechei subsp. hoffmannii
Comparison to close relatives: Gilliamella apis
Comparison to close relatives: Succinimonas amylolytica
Comparison to close relatives: Paraferrimonas haliotis
Comparison to close relatives: Actinobacillus pleuropneumoniae
Comparison to close relatives: Frischella perrara
Comparison to close relatives: Pectobacterium fontis
Comparison to close relatives: Pectobacterium polaris
Comparison to close relatives: Aeromonas media
Comparison to close relatives: Aeromonas eucrenophila
Comparison to close relatives: Dickeya lacustris
Comparison to close relatives: Dickeya parazeae
Comparison to close relatives: Aeromonas lusitana
Comparison to close relatives: Pectobacterium parmentieri
Comparison to close relatives: Pectobacterium quasiaquaticum
Comparison to close relatives: Ruminobacter amylophilus
Comparison to close relatives: Klebsiella pneumoniae
Comparison to close relatives: Enterobacter hormaechei
Comparison to close relatives: Pectobacterium carotovorum
Carbon source: starch
CAZyme: GH119
CAZyme: GH13
CAZyme: GH23
CAZyme: GH6
CAZyme: GH77
CAZyme: GH28
CAZyme: GH73
CAZyme: GH36
CAZyme: GH5
CAZyme: GH32
CAZyme: GH85
CAZyme: GH103
CAZyme: GH38
CAZyme: GH0
CAZyme: GH19
CAZyme: GH114
CAZyme: GH84
CAZyme: GT2
CAZyme: GT35
CAZyme: GT51
CAZyme: GT107
CAZyme: GT4

GCA_000222855.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_000222855.1 (CAZyme)
CAZyme: GT5
Occurance: 3

GCA_000222855.1 (CAZyme)
CAZyme: GT9
Occurance: 3

GCA_000222855.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_000222855.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_000222855.1 (CAZyme)
CAZyme: GT104
Occurance: 1

GCA_000222855.1 (CAZyme)
CAZyme: GT8
Occurance: 1

GCA_000222855.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_000222855.1 (CAZyme)
CAZyme: CE11
Occurance: 2

GCA_000222855.1 (CAZyme)
CAZyme: CBM20
Occurance: 1

GCA_000222855.1 (CAZyme)
CAZyme: CBM25
Occurance: 1

GCA_000222855.1 (CAZyme)
CAZyme: CBM69
Occurance: 3

GCA_000222855.1 (CAZyme)
CAZyme: CBM48
Occurance: 7

GCA_000222855.1 (CAZyme)
CAZyme: CBM50
Occurance: 14

GCA_000222855.1 (CAZyme)
CAZyme: CBM13
Occurance: 1

GCA_000222855.1 (CAZyme)
CAZyme: CBM41
Occurance: 1

GCA_000222855.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_000222855.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000222855.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000222855.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000222855.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000222855.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000222855.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000222855.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000222855.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000222855.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000222855.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000222855.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000222855.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000222855.1 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_000222855.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000222855.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000222855.1 (Pathway)
Pathway: Pantothenate biosynthesis, valine/L-aspartate => pantothenate
Metabolic module: M00119

GCA_000222855.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000222855.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000222855.1 (Pathway)
Pathway: Fumarate reductase, prokaryotes
Metabolic module: M00150

GCA_000222855.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCA_000222855.1 (Pathway)
Pathway: Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
Metabolic module: M00526

GCA_000222855.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000222855.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000222855.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_000222855.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000222855.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_000222855.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000222855.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc
Metabolic module: M00996

GCA_000222855.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000222855.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_000222855.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000222855.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000222855.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000222855.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000222855.1 (Pathway)
Pathway: Starch degradation
Metabolic module: MF0005

GCA_000222855.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_000222855.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000222855.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000222855.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000222855.1 (Pathway)
Pathway: Threonine degradation I
Metabolic module: MF0049

GCA_000222855.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000222855.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCA_000222855.1 (Pathway)
Pathway: Pyruvate:formate lyase
Metabolic module: MF0074

GCA_000222855.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000222855.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.54

GCA_000222855.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000222855.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 1.01

GCA_000222855.1 (MAGs)
MAGs: no MAG matches found