GCA_000218705.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Prochlorococcus marinus subsp. pastoris
Comparison to close relatives: Prochlorococcus marinus subsp. marinus
Comparison to close relatives: Prochlorothrix hollandica
Comparison to close relatives: Pantanalinema rosaneae
Comparison to close relatives: Alkalinema pantanalense
Comparison to close relatives: Romeriopsis marina
Comparison to close relatives: Rubidibacter lacunae
Comparison to close relatives: Fortiea necridiiformans
Comparison to close relatives: Romeriopsis navalis
Comparison to close relatives: Foliisarcina bertiogensis
Comparison to close relatives: Iphinoe spelaeobios
Comparison to close relatives: Kryptousia macronema
Comparison to close relatives: Amazonocrinis nigriterrae
Comparison to close relatives: Atlanticothrix silvestris
Comparison to close relatives: Desmonostoc salinum
Comparison to close relatives: Phyllonema aviceniicola
Comparison to close relatives: Planktothricoides raciborskii
Comparison to close relatives: Cephalothrix komarekiana
Comparison to close relatives: Amazonocrinis malviyae
Comparison to close relatives: Nostoc neudorfense
Comparison to close relatives: Halotia wernerae
Comparison to close relatives: Gloeomargarita lithophora
Comparison to close relatives: Cephalothrix lacustris
Comparison to close relatives: Dendronalium phyllosphericum
Comparison to close relatives: Kryptousia microlepis
Comparison to close relatives: Desikacharya soli
Comparison to close relatives: Aliinostoc morphoplasticum
Comparison to close relatives: Halotia longispora
Comparison to close relatives: Halotia branconii
Comparison to close relatives: Desikacharya nostocoides
Comparison to close relatives: Halospirulina tapeticola
Comparison to close relatives: Crinalium epipsammum
Comparison to close relatives: Ancylothrix terrestris
Comparison to close relatives: Desikacharya thermotolerans
Comparison to close relatives: Chalicogloea cavernicola
Comparison to close relatives: Acetonema longum
Comparison to close relatives: Laceyella sacchari
Comparison to close relatives: Alkalihalobacillus algicola
Comparison to close relatives: Lihuaxuella thermophila
Comparison to close relatives: Laceyella putida
Comparison to close relatives: Virgibacillus salarius
Comparison to close relatives: Laceyella tengchongensis
Comparison to close relatives: Laceyella sediminis
Comparison to close relatives: Sphingomonas citri
Comparison to close relatives: Caldisalinibacter kiritimatiensis
Comparison to close relatives: Novosphingobium hassiacum
Comparison to close relatives: Sphingomonas folii
Comparison to close relatives: Desulfovectis peckii
Comparison to close relatives: Novosphingobium arabidopsis
Comparison to close relatives: Novosphingobium olei
Carbon source: starch
CAZyme: GH13
CAZyme: GH6
CAZyme: GH57
CAZyme: GH77
CAZyme: GH19
CAZyme: GH0
CAZyme: GH23
CAZyme: GH100
CAZyme: GT13
CAZyme: GT35
CAZyme: GT83
CAZyme: GT4
CAZyme: GT51
CAZyme: GT2
CAZyme: GT30
CAZyme: GT32
CAZyme: GT0
CAZyme: GT5
CAZyme: GT28
CAZyme: GT81
CAZyme: GT19
CAZyme: GT11
CAZyme: GT1
CAZyme: CE11
CAZyme: CBM48

GCA_000218705.1 (CAZyme)
CAZyme: CBM13
Occurance: 1

GCA_000218705.1 (CAZyme)
CAZyme: CBM50
Occurance: 1

GCA_000218705.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_000218705.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000218705.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000218705.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000218705.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000218705.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000218705.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000218705.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000218705.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000218705.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000218705.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000218705.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000218705.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000218705.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000218705.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000218705.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000218705.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000218705.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000218705.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000218705.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000218705.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000218705.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000218705.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_000218705.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000218705.1 (Pathway)
Pathway: Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine
Metabolic module: M00133

GCA_000218705.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000218705.1 (Pathway)
Pathway: Photosystem II
Metabolic module: M00161

GCA_000218705.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000218705.1 (Pathway)
Pathway: Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Metabolic module: M00527

GCA_000218705.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000218705.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000218705.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000218705.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000218705.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000218705.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000218705.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_000218705.1 (Pathway)
Pathway: Glycogen biosynthesis, glucose-1P => glycogen/starch
Metabolic module: M00854

GCA_000218705.1 (Pathway)
Pathway: Pentose phosphate pathway (Pentose phosphate cycle)
Metabolic module: M00004

GCA_000218705.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_000218705.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000218705.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000218705.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000218705.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000218705.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000218705.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000218705.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_000218705.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000218705.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000218705.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.01

GCA_000218705.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000218705.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000218705.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 3.6
Relative abundance (%): 0.76

GCA_000218705.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 36.3
Relative abundance (%): 1.97

GCA_000218705.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000218705.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.02

GCA_000218705.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 28.3
Relative abundance (%): 6.73

GCA_000218705.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.31

GCA_000218705.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.03

GCA_000218705.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000218705.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0.7
Relative abundance (%): 0.1

GCA_000218705.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 1
Relative abundance (%): 0.73

GCA_000218705.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.01

GCA_000218705.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 13.6
Relative abundance (%): 0.64

GCA_000218705.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.02

GCA_000218705.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000218705.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000218705.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.01

GCA_000218705.1 (MAGs)
MAGs: no MAG matches found