GCA_000169355.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Flavobacterium subsaxonicum
Comparison to close relatives: Flavobacterium hauense
Comparison to close relatives: Flavobacterium azooxidireducens
Comparison to close relatives: Flavobacterium lacus
Comparison to close relatives: Flavobacterium azizsancarii
Comparison to close relatives: Flavobacterium cerinum
Comparison to close relatives: Flavobacterium aquaticum
Comparison to close relatives: Flavobacterium cheniae
Comparison to close relatives: Flavobacterium cupreum
Comparison to close relatives: Flavobacterium aquatile
Comparison to close relatives: Flavobacterium notoginsengisoli
Comparison to close relatives: Flavobacterium succinicans
Comparison to close relatives: Flavobacterium buctense
Comparison to close relatives: Flavobacterium cucumis
Comparison to close relatives: Flavobacterium lacisediminis
Comparison to close relatives: Flavobacterium limicola
Comparison to close relatives: Flavobacterium ovatum
Comparison to close relatives: Flavobacterium segetis
Comparison to close relatives: Flavobacterium reichenbachii
Comparison to close relatives: Flavobacterium flevense
Comparison to close relatives: Flavobacterium circumlabens
Comparison to close relatives: Flavobacterium celericrescens
Comparison to close relatives: Flavobacterium channae
Comparison to close relatives: Flavobacterium algicola
Comparison to close relatives: Flavobacterium swingsii
Comparison to close relatives: Flavobacterium proteolyticum
Comparison to close relatives: Flavobacterium luticocti
Comparison to close relatives: Flavobacterium orientale
Comparison to close relatives: Flavobacterium piscinae
Comparison to close relatives: Flavobacterium maris
Comparison to close relatives: Flavobacterium qiangtangense
Comparison to close relatives: Flavobacterium ichthyis
Comparison to close relatives: Flavobacterium gelidilacus
Comparison to close relatives: Flavobacterium indicum
Comparison to close relatives: Flavobacterium macacae
Comparison to close relatives: Flavobacterium ardleyense
Comparison to close relatives: Flavobacterium yanchengense
Comparison to close relatives: Flavobacterium sediminilitoris
Comparison to close relatives: Flavobacterium stagni
Comparison to close relatives: Flavobacterium cyclinae
Comparison to close relatives: Flavobacterium urocaniciphilum
Comparison to close relatives: Flavobacterium zepuense
Comparison to close relatives: Flavobacterium ahnfeltiae
Comparison to close relatives: Flavobacterium faecale
Comparison to close relatives: Flavobacterium zaozhuangense
Comparison to close relatives: Flavobacterium restrictum
Comparison to close relatives: Flavobacterium franklandianum
Comparison to close relatives: Flavobacterium supellecticarium
Comparison to close relatives: Flavobacterium aquimarinum
Comparison to close relatives: Flavobacterium kingsejongi
CAZyme: GH13
CAZyme: GH149
CAZyme: GH3
CAZyme: GH92
CAZyme: GH0
CAZyme: GH6
CAZyme: GH2
CAZyme: GH65
CAZyme: GH20
CAZyme: GH97
CAZyme: GH28
CAZyme: GH36
CAZyme: GH16
CAZyme: GH64
CAZyme: GH101
CAZyme: GH17
CAZyme: GH23
CAZyme: GH30
CAZyme: GH19
CAZyme: GH43
CAZyme: GH53
CAZyme: GH114
CAZyme: GH25
CAZyme: GH73
CAZyme: GT2
CAZyme: GT13

GCA_000169355.1 (CAZyme)
CAZyme: GT51
Occurance: 3

GCA_000169355.1 (CAZyme)
CAZyme: GT4
Occurance: 23

GCA_000169355.1 (CAZyme)
CAZyme: GT22
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: GT26
Occurance: 2

GCA_000169355.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_000169355.1 (CAZyme)
CAZyme: GT30
Occurance: 2

GCA_000169355.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: GT0
Occurance: 6

GCA_000169355.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: GT9
Occurance: 3

GCA_000169355.1 (CAZyme)
CAZyme: GT1
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: GT17
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: GT5
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: PL12
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: CE14
Occurance: 2

GCA_000169355.1 (CAZyme)
CAZyme: CE9
Occurance: 2

GCA_000169355.1 (CAZyme)
CAZyme: CE11
Occurance: 2

GCA_000169355.1 (CAZyme)
CAZyme: CE4
Occurance: 3

GCA_000169355.1 (CAZyme)
CAZyme: CE1
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: CE0
Occurance: 2

GCA_000169355.1 (CAZyme)
CAZyme: CBM32
Occurance: 2

GCA_000169355.1 (CAZyme)
CAZyme: CBM26
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: CBM5
Occurance: 5

GCA_000169355.1 (CAZyme)
CAZyme: CBM6
Occurance: 4

GCA_000169355.1 (CAZyme)
CAZyme: CBM9
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: CBM50
Occurance: 16

GCA_000169355.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_000169355.1 (CAZyme)
CAZyme: CBM38
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: CBM4
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: CBM2
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: CBM20
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000169355.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_000169355.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000169355.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000169355.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000169355.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000169355.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000169355.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000169355.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000169355.1 (Pathway)
Pathway: Methionine biosynthesis, aspartate => homoserine => methionine
Metabolic module: M00017

GCA_000169355.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000169355.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000169355.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000169355.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000169355.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000169355.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000169355.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000169355.1 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_000169355.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000169355.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000169355.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000169355.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000169355.1 (Pathway)
Pathway: Acylglycerol degradation
Metabolic module: M00098

GCA_000169355.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000169355.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000169355.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000169355.1 (Pathway)
Pathway: Cytochrome c oxidase, cbb3-type
Metabolic module: M00156

GCA_000169355.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000169355.1 (Pathway)
Pathway: Cysteine biosynthesis, homocysteine + serine => cysteine
Metabolic module: M00338

GCA_000169355.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000169355.1 (Pathway)
Pathway: UDP-Gal biosynthesis, Gal => UDP-Gal
Metabolic module: M00554

GCA_000169355.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000169355.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000169355.1 (Pathway)
Pathway: Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
Metabolic module: M00632

GCA_000169355.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000169355.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000169355.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000169355.1 (Pathway)
Pathway: Proline metabolism
Metabolic module: M00972

GCA_000169355.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000169355.1 (Pathway)
Pathway: UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA
Metabolic module: M01014

GCA_000169355.1 (Pathway)
Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA
Metabolic module: M01036

GCA_000169355.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000169355.1 (Pathway)
Pathway: Histidine degradation, histidine => N-formiminoglutamate => glutamate
Metabolic module: M00045

GCA_000169355.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000169355.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000169355.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000169355.1 (Pathway)
Pathway: Maltose degradation
Metabolic module: MF0008

GCA_000169355.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_000169355.1 (Pathway)
Pathway: Galactose degradation
Metabolic module: MF0017

GCA_000169355.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000169355.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000169355.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000169355.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000169355.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000169355.1 (Pathway)
Pathway: Cysteine biosynthesis/homocysteine degradation
Metabolic module: MF0043

GCA_000169355.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000169355.1 (Pathway)
Pathway: Glutamine degradation I
Metabolic module: MF0046

GCA_000169355.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000169355.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000169355.1 (Pathway)
Pathway: Histidine degradation
Metabolic module: MF0056

GCA_000169355.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000169355.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000169355.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_000169355.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000169355.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.19

GCA_000169355.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.01

GCA_000169355.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000169355.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 28.7
Relative abundance (%): 1.13

GCA_000169355.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.28

GCA_000169355.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.01

GCA_000169355.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.01

GCA_000169355.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 4
Relative abundance (%): 1.62

GCA_000169355.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 5.8
Relative abundance (%): 0.59

GCA_000169355.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 2.3
Relative abundance (%): 0.22

GCA_000169355.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.3

GCA_000169355.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 18.6
Relative abundance (%): 0.11

GCA_000169355.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 29
Relative abundance (%): 0.62

GCA_000169355.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 2.2
Relative abundance (%): 0.04

GCA_000169355.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 1.4
Relative abundance (%): 0.11

GCA_000169355.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.02

GCA_000169355.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.02

GCA_000169355.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.11

GCA_000169355.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000169355.1 (MAGs)
MAGs: no MAG matches found