GCA_000169115.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Luminiphilus syltensis
Comparison to close relatives: Kineobactrum sediminis
Comparison to close relatives: Haliea atlantica
Comparison to close relatives: Haliea salexigens
Comparison to close relatives: Kineobactrum salinum
Comparison to close relatives: Halioglobus pacificus
Comparison to close relatives: Pseudohaliea rubra
Comparison to close relatives: Parahaliea maris
Comparison to close relatives: Pseudohalioglobus lutimaris
Comparison to close relatives: Parahaliea mediterranea
Comparison to close relatives: Chromatocurvus halotolerans
Comparison to close relatives: Parahaliea aestuarii
Comparison to close relatives: Haliea alexandrii
Comparison to close relatives: Aequoribacter fuscus
Comparison to close relatives: Pseudohalioglobus sediminis
Comparison to close relatives: Halioglobus japonicus
Comparison to close relatives: Marimicrobium arenosum
Comparison to close relatives: Seongchinamella sediminis
Comparison to close relatives: Seongchinamella unica
Comparison to close relatives: Halioglobus maricola
Comparison to close relatives: Microbulbifer thermotolerans
Comparison to close relatives: Spongiibacter tropicus
Comparison to close relatives: Microbulbifer marinus
Comparison to close relatives: Spongiibacter pelagi
Comparison to close relatives: Microbulbifer yueqingensis
Comparison to close relatives: Dasania phycosphaerae
Comparison to close relatives: Porticoccus litoralis
Comparison to close relatives: Gilvimarinus chinensis
Comparison to close relatives: Microbulbifer aggregans
Comparison to close relatives: Microbulbifer taiwanensis
Comparison to close relatives: Microbulbifer pacificus
Comparison to close relatives: Microbulbifer sediminum
Comparison to close relatives: Alcanivorax venustensis
Comparison to close relatives: Zhongshania aliphaticivorans
Comparison to close relatives: Microbulbifer zhoushanensis
Comparison to close relatives: Sedimenticola hydrogenitrophicus
Comparison to close relatives: Microbulbifer variabilis
Comparison to close relatives: Microbulbifer gwangyangensis
Comparison to close relatives: Zhongshania aquimaris
Comparison to close relatives: Pseudomonas iranensis
Comparison to close relatives: Pseudomonas azadiae
Comparison to close relatives: Pseudomonas atacamensis
Comparison to close relatives: Pseudomonas azerbaijanoccidentalis
Comparison to close relatives: Microbulbifer mangrovi
Comparison to close relatives: Pseudomonas balearica
Comparison to close relatives: Pseudomonas kielensis
Comparison to close relatives: Pseudomonas farris
Comparison to close relatives: Pseudomonas ogarae
Comparison to close relatives: Pseudomonas azerbaijanorientalis
Comparison to close relatives: Pseudomonas laurylsulfatiphila
Comparison to close relatives: Stutzerimonas balearica
Comparison to close relatives: Alloalcanivorax venustensis
CAZyme: GH13
CAZyme: GH6
CAZyme: GH3
CAZyme: GH43
CAZyme: GH65
CAZyme: GH73
CAZyme: GH36
CAZyme: GH23
CAZyme: GH42
CAZyme: GH117
CAZyme: GH28
CAZyme: GH16
CAZyme: GH5
CAZyme: GH33
CAZyme: GH20
CAZyme: GH154
CAZyme: GH17
CAZyme: GH71
CAZyme: GH135
CAZyme: GH0
CAZyme: GH19
CAZyme: GH103
CAZyme: GH114
CAZyme: GT4

GCA_000169115.1 (CAZyme)
CAZyme: GT2
Occurance: 18

GCA_000169115.1 (CAZyme)
CAZyme: GT13
Occurance: 2

GCA_000169115.1 (CAZyme)
CAZyme: GT51
Occurance: 2

GCA_000169115.1 (CAZyme)
CAZyme: GT41
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: GT25
Occurance: 2

GCA_000169115.1 (CAZyme)
CAZyme: GT90
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: GT22
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: GT1
Occurance: 9

GCA_000169115.1 (CAZyme)
CAZyme: GT28
Occurance: 5

GCA_000169115.1 (CAZyme)
CAZyme: GT9
Occurance: 2

GCA_000169115.1 (CAZyme)
CAZyme: GT7
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: GT81
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: GT0
Occurance: 3

GCA_000169115.1 (CAZyme)
CAZyme: CE6
Occurance: 3

GCA_000169115.1 (CAZyme)
CAZyme: CE16
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: CE11
Occurance: 3

GCA_000169115.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: CE0
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: CE1
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: CBM20
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: CBM50
Occurance: 12

GCA_000169115.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_000169115.1 (CAZyme)
CAZyme: CBM32
Occurance: 3

GCA_000169115.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: CBM5
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000169115.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_000169115.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000169115.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000169115.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000169115.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000169115.1 (Pathway)
Pathway: Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Metabolic module: M00008

GCA_000169115.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000169115.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000169115.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000169115.1 (Pathway)
Pathway: Glyoxylate cycle
Metabolic module: M00012

GCA_000169115.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000169115.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000169115.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000169115.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000169115.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000169115.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000169115.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000169115.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000169115.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000169115.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000169115.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000169115.1 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_000169115.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000169115.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000169115.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000169115.1 (Pathway)
Pathway: C5 isoprenoid biosynthesis, non-mevalonate pathway
Metabolic module: M00096

GCA_000169115.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000169115.1 (Pathway)
Pathway: Acylglycerol degradation
Metabolic module: M00098

GCA_000169115.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000169115.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000169115.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000169115.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000169115.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P
Metabolic module: M00124

GCA_000169115.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000169115.1 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_000169115.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000169115.1 (Pathway)
Pathway: Cytochrome c oxidase, cbb3-type
Metabolic module: M00156

GCA_000169115.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000169115.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000169115.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000169115.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000169115.1 (Pathway)
Pathway: UDP-Gal biosynthesis, Gal => UDP-Gal
Metabolic module: M00554

GCA_000169115.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_000169115.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000169115.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_000169115.1 (Pathway)
Pathway: Anoxygenic photosystem II
Metabolic module: M00597

GCA_000169115.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000169115.1 (Pathway)
Pathway: Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
Metabolic module: M00632

GCA_000169115.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000169115.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000169115.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000169115.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_000169115.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000169115.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc
Metabolic module: M00996

GCA_000169115.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000169115.1 (Pathway)
Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf
Metabolic module: M01004

GCA_000169115.1 (Pathway)
Pathway: UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc
Metabolic module: M01009

GCA_000169115.1 (Pathway)
Pathway: GDP-6-deoxy-Tal biosynthesis, GDP-Man => GDP-6-deoxy-Tal
Metabolic module: M01019

GCA_000169115.1 (Pathway)
Pathway: Spirilloxanthin biosynthesis, lycopene => spirilloxanthin
Metabolic module: M01039

GCA_000169115.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000169115.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000169115.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_000169115.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000169115.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000169115.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000169115.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000169115.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000169115.1 (Pathway)
Pathway: Tetrahydrofolate biosynthesis, GTP => THF
Metabolic module: M00126

GCA_000169115.1 (Pathway)
Pathway: C1-unit interconversion, prokaryotes
Metabolic module: M00140

GCA_000169115.1 (Pathway)
Pathway: Siroheme biosynthesis, glutamyl-tRNA => siroheme
Metabolic module: M00846

GCA_000169115.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_000169115.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_000169115.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000169115.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000169115.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000169115.1 (Pathway)
Pathway: Isoleucine degradation
Metabolic module: MF0036

GCA_000169115.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_000169115.1 (Pathway)
Pathway: Glutamine degradation I
Metabolic module: MF0046

GCA_000169115.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000169115.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000169115.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000169115.1 (Pathway)
Pathway: Glyoxylate bypass
Metabolic module: MF0063

GCA_000169115.1 (Pathway)
Pathway: Entner-Doudoroff pathway
Metabolic module: MF0066

GCA_000169115.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_000169115.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000169115.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000169115.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000169115.1 (Pathway)
Pathway: Formate conversion
Metabolic module: MF0077

GCA_000169115.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000169115.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_000169115.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000169115.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000169115.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000169115.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000169115.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.02

GCA_000169115.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 25.7
Relative abundance (%): 0.42

GCA_000169115.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000169115.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000169115.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 22
Relative abundance (%): 0.27

GCA_000169115.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 1
Relative abundance (%): 0.06

GCA_000169115.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.03

GCA_000169115.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000169115.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.02

GCA_000169115.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.01

GCA_000169115.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.5
Relative abundance (%): 0

GCA_000169115.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 4.4
Relative abundance (%): 0.02

GCA_000169115.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000169115.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000169115.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000169115.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000169115.1 (MAGs)
MAGs: no MAG matches found