GCA_000168995.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Methyloradius palustris
Comparison to close relatives: Methylotenera oryzisoli
Comparison to close relatives: Methylotenera mobilis
Comparison to close relatives: Methylophilus methylotrophus
Comparison to close relatives: Methylophilus quaylei
Comparison to close relatives: Methylotenera versatilis
Comparison to close relatives: Methylophilus glucosoxydans
Comparison to close relatives: Methylophilus leisingeri
Comparison to close relatives: Methylophilus aquaticus
Comparison to close relatives: Methylophilus luteus
Comparison to close relatives: Methylophilus flavus
Comparison to close relatives: Methylovorus glucosotrophus
Comparison to close relatives: Methylophilus rhizosphaerae
Comparison to close relatives: Methylobacillus rhizosphaerae
Comparison to close relatives: Methylovorus menthalis
Comparison to close relatives: Methylobacillus arboreus
Comparison to close relatives: Methylobacillus methanolivorans
Comparison to close relatives: Methylobacillus flagellatus
Comparison to close relatives: Methylobacillus glycogenes
Comparison to close relatives: Pseudomethylobacillus aquaticus
Comparison to close relatives: Methylobacillus caricis
Comparison to close relatives: Novimethylophilus kurashikiensis
Comparison to close relatives: Methylovorus mays
Comparison to close relatives: Methylobacillus gramineus
Comparison to close relatives: Methylobacillus pratensis
Comparison to close relatives: Sulfuricella denitrificans
Comparison to close relatives: Sulfuriferula multivorans
Comparison to close relatives: Sulfurimicrobium lacus
Comparison to close relatives: Sulfuriferula nivalis
Comparison to close relatives: Sulfuriferula thiophila
Comparison to close relatives: Undibacterium rugosum
Comparison to close relatives: Thiobacter subterraneus
Comparison to close relatives: Denitratisoma oestradiolicum
Comparison to close relatives: Herbaspirillum huttiense subsp. huttiense
Comparison to close relatives: Ampullimonas aquatilis
Comparison to close relatives: Undibacterium luofuense
Comparison to close relatives: Undibacterium griseum
Comparison to close relatives: Thiobacillus thioparus
Comparison to close relatives: Herbaspirillum huttiense subsp. putei
Comparison to close relatives: Undibacterium rivi
Comparison to close relatives: Massilia oculi
Comparison to close relatives: Herbaspirillum chlorophenolicum
Comparison to close relatives: Ephemeroptericola cinctiostellae
Comparison to close relatives: Leeia oryzae
Comparison to close relatives: Oxalobacter vibrioformis
Comparison to close relatives: Chitinimonas taiwanensis
Comparison to close relatives: Propionivibrio limicola
Comparison to close relatives: Orrella dioscoreae
Comparison to close relatives: Rhodocyclus gracilis
Comparison to close relatives: Sulfuritalea hydrogenivorans
Comparison to close relatives: Herbaspirillum huttiense
CAZyme: GH13
CAZyme: GH6
CAZyme: GH28
CAZyme: GH23
CAZyme: GH102
CAZyme: GH0
CAZyme: GH3
CAZyme: GH19
CAZyme: GH103
CAZyme: GH114
CAZyme: GT13
CAZyme: GT51
CAZyme: GT41
CAZyme: GT22
CAZyme: GT4
CAZyme: GT0
CAZyme: GT1
CAZyme: GT9
CAZyme: GT28
CAZyme: GT2
CAZyme: GT32
CAZyme: GT30
CAZyme: GT81
CAZyme: GT19
CAZyme: GT104

GCA_000168995.1 (CAZyme)
CAZyme: GT25
Occurance: 1

GCA_000168995.1 (CAZyme)
CAZyme: GT11
Occurance: 1

GCA_000168995.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_000168995.1 (CAZyme)
CAZyme: GT26
Occurance: 1

GCA_000168995.1 (CAZyme)
CAZyme: CE11
Occurance: 2

GCA_000168995.1 (CAZyme)
CAZyme: CBM13
Occurance: 5

GCA_000168995.1 (CAZyme)
CAZyme: CBM50
Occurance: 6

GCA_000168995.1 (CAZyme)
CAZyme: CBM5
Occurance: 1

GCA_000168995.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_000168995.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000168995.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000168995.1 (Pathway)
Pathway: Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Metabolic module: M00008

GCA_000168995.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000168995.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000168995.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000168995.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000168995.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000168995.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000168995.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000168995.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000168995.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000168995.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000168995.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000168995.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000168995.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000168995.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000168995.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000168995.1 (Pathway)
Pathway: ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Metabolic module: M00064

GCA_000168995.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000168995.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000168995.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000168995.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000168995.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000168995.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000168995.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000168995.1 (Pathway)
Pathway: Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
Metabolic module: M00123

GCA_000168995.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000168995.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000168995.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000168995.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000168995.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000168995.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000168995.1 (Pathway)
Pathway: Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP
Metabolic module: M00572

GCA_000168995.1 (Pathway)
Pathway: Pentose phosphate pathway, archaea, fructose 6P => ribose 5P
Metabolic module: M00580

GCA_000168995.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000168995.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000168995.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_000168995.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000168995.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000168995.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_000168995.1 (Pathway)
Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA
Metabolic module: M01036

GCA_000168995.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000168995.1 (Pathway)
Pathway: GDP-D-Rha4N biosynthesis, Fru-6P => GDP-D-Rha4N
Metabolic module: M01006

GCA_000168995.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000168995.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_000168995.1 (Pathway)
Pathway: Pentose phosphate pathway (Pentose phosphate cycle)
Metabolic module: M00004

GCA_000168995.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_000168995.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000168995.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000168995.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000168995.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000168995.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000168995.1 (Pathway)
Pathway: Siroheme biosynthesis, glutamyl-tRNA => siroheme
Metabolic module: M00846

GCA_000168995.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000168995.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000168995.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000168995.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000168995.1 (Pathway)
Pathway: Entner-Doudoroff pathway
Metabolic module: MF0066

GCA_000168995.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_000168995.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000168995.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000168995.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000168995.1 (Pathway)
Pathway: Formate conversion
Metabolic module: MF0077

GCA_000168995.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000168995.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000168995.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000168995.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 5.8
Relative abundance (%): 0.93

GCA_000168995.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 10.2
Relative abundance (%): 0.36

GCA_000168995.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_000168995.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.05

GCA_000168995.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 29.5
Relative abundance (%): 0.28

GCA_000168995.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 3
Relative abundance (%): 0.25

GCA_000168995.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.26

GCA_000168995.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000168995.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0.8
Relative abundance (%): 0

GCA_000168995.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 5
Relative abundance (%): 0.57

GCA_000168995.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 3
Relative abundance (%): 0.27

GCA_000168995.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 2.7
Relative abundance (%): 0.01

GCA_000168995.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000168995.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000168995.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000168995.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000168995.1 (MAGs)
MAGs: 20100303_Bin_88_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20100330_Bin_68-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20100413_Bin_46_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20100420_Bin_72_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20100423_Bin_9_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20100430_Bin_43_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20100511_Bin_52_2-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20100518_Bin_121_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20110321_Bin_20_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20110328_Bin_4_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20110331_Bin_54_2-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20110407_Bin_55_2-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20110414_Bin_23_3-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20110421_Bin_79_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20110426_Bin_54_2-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20110428_Bin_5_1_3-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20110506_Bin_88_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20110509_Bin_16_2-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20110512_Bin_29_2-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20110526_Bin_150_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20120308_Bin_88_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20120405_Bin_125_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20120416_Bin_12_2_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20120426_Bin_84_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20120524_Bin_124_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20160316_Bin_43_8-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20160321_Bin_52_5-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20160412_Bin_12_7-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20160419_Bin_5_2-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20160426_Bin_23_1-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20160502_Bin_56_3-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20160512_Bin_4_4-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 20160517_Bin_17_7-contigs.fa
Ecosystem: North-sea_algael_bloom

GCA_000168995.1 (MAGs)
MAGs: 3300025881_63.fna
Ecosystem: Generic