GCA_000163695.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Paludibacter propionicigenes
Comparison to close relatives: Paludibacter jiangxiensis
Comparison to close relatives: Fermentimonas caenicola
Comparison to close relatives: Dysgonomonas mossii
Comparison to close relatives: Microbacter margulisiae
Comparison to close relatives: Dysgonomonas gadei
Comparison to close relatives: Dysgonomonas oryzarvi
Comparison to close relatives: Dysgonomonas capnocytophagoides
Comparison to close relatives: Proteiniphilum propionicum
Comparison to close relatives: Dysgonomonas hofstadii
Comparison to close relatives: Parabacteroides goldsteinii
Comparison to close relatives: Proteiniphilum acetatigenes
Comparison to close relatives: Proteiniphilum saccharofermentans
Comparison to close relatives: Macellibacteroides fermentans
Comparison to close relatives: Parabacteroides gordonii
Comparison to close relatives: Parabacteroides chartae
Comparison to close relatives: Dysgonomonas termitidis
Comparison to close relatives: Dysgonomonas alginatilytica
Comparison to close relatives: Barnesiella propionica
Comparison to close relatives: Parabacteroides johnsonii
Comparison to close relatives: Petrimonas mucosa
Comparison to close relatives: Alistipes putredinis
Comparison to close relatives: Tannerella forsythia
Comparison to close relatives: Parabacteroides merdae
Comparison to close relatives: Seramator thermalis
Comparison to close relatives: Parabacteroides leei
Comparison to close relatives: Bacteroides cellulosilyticus
Comparison to close relatives: Coprobacter tertius
Comparison to close relatives: Parabacteroides chongii
Comparison to close relatives: Alistipes onderdonkii subsp. vulgaris
Comparison to close relatives: Alistipes dispar
Comparison to close relatives: Tannerella serpentiformis
Comparison to close relatives: Alistipes shahii
Comparison to close relatives: Alistipes onderdonkii subsp. onderdonkii
Comparison to close relatives: Parabacteroides faecis
Comparison to close relatives: Parabacteroides chinchillae
Comparison to close relatives: Bacteroides muris
Comparison to close relatives: Bacteroides intestinalis
Comparison to close relatives: Alistipes finegoldii
Comparison to close relatives: Bacteroides oleiciplenus
Comparison to close relatives: Alistipes indistinctus
Comparison to close relatives: Parabacteroides distasonis
Comparison to close relatives: Breznakibacter xylanolyticus
Comparison to close relatives: Bacteroides nordii
Comparison to close relatives: Bacteroides stercoris
Comparison to close relatives: Labilibacter sediminis
Comparison to close relatives: Coprobacter secundus
Comparison to close relatives: Bacteroides helcogenes
Comparison to close relatives: Bacteroides salyersiae
Comparison to close relatives: Maribellus luteus
Comparison to close relatives: Alistipes onderdonkii
Carbon source: starch
CAZyme: GH13
CAZyme: GH6
CAZyme: GH65
CAZyme: GH77
CAZyme: GH133
CAZyme: GH28
CAZyme: GH101
CAZyme: GH0
CAZyme: GH23
CAZyme: GH57
CAZyme: GH19
CAZyme: GH73
CAZyme: GH16
CAZyme: GT2
CAZyme: GT13
CAZyme: GT35
CAZyme: GT51
CAZyme: GT4
CAZyme: GT22
CAZyme: GT3
CAZyme: GT28
CAZyme: GT32
CAZyme: GT61
CAZyme: GT0

GCA_000163695.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_000163695.1 (CAZyme)
CAZyme: GT5
Occurance: 1

GCA_000163695.1 (CAZyme)
CAZyme: PL0
Occurance: 1

GCA_000163695.1 (CAZyme)
CAZyme: CE11
Occurance: 1

GCA_000163695.1 (CAZyme)
CAZyme: CE0
Occurance: 1

GCA_000163695.1 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_000163695.1 (CAZyme)
CAZyme: CBM50
Occurance: 12

GCA_000163695.1 (CAZyme)
CAZyme: CBM20
Occurance: 2

GCA_000163695.1 (CAZyme)
CAZyme: CBM13
Occurance: 3

GCA_000163695.1 (CAZyme)
CAZyme: CBM5
Occurance: 3

GCA_000163695.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_000163695.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000163695.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_000163695.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000163695.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000163695.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000163695.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000163695.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000163695.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000163695.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000163695.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000163695.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000163695.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000163695.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000163695.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000163695.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCA_000163695.1 (Pathway)
Pathway: Dissimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00530

GCA_000163695.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000163695.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_000163695.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000163695.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000163695.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000163695.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000163695.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_000163695.1 (Pathway)
Pathway: UDP-ManNAc3NAcA biosynthesis, UDP-GlcNAc => UDP-ManNAc3NAcA
Metabolic module: M01035

GCA_000163695.1 (Pathway)
Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA
Metabolic module: M01036

GCA_000163695.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_000163695.1 (Pathway)
Pathway: Histidine degradation, histidine => N-formiminoglutamate => glutamate
Metabolic module: M00045

GCA_000163695.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000163695.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000163695.1 (Pathway)
Pathway: Tryptophan degradation
Metabolic module: MF0025

GCA_000163695.1 (Pathway)
Pathway: Tyrosine degradation II
Metabolic module: MF0027

GCA_000163695.1 (Pathway)
Pathway: Aspartate degradation II
Metabolic module: MF0029

GCA_000163695.1 (Pathway)
Pathway: Glutamate degradation III
Metabolic module: MF0032

GCA_000163695.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000163695.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000163695.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000163695.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000163695.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000163695.1 (Pathway)
Pathway: Lysine degradation I
Metabolic module: MF0057

GCA_000163695.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCA_000163695.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000163695.1 (Pathway)
Pathway: Butyrate production II
Metabolic module: MF0089

GCA_000163695.1 (Pathway)
Pathway: Nitrate reduction (dissimilatory)
Metabolic module: MF0101

GCA_000163695.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 2.2
Relative abundance (%): 0.05

GCA_000163695.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_000163695.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 2.4
Relative abundance (%): 0.04

GCA_000163695.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 0.6
Relative abundance (%): 0

GCA_000163695.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.97

GCA_000163695.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.01

GCA_000163695.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000163695.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000163695.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.03

GCA_000163695.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000163695.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 40
Relative abundance (%): 0.44

GCA_000163695.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000163695.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_000163695.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000163695.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.02

GCA_000163695.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 28.8
Relative abundance (%): 0.08

GCA_000163695.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.02

GCA_000163695.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 9.4
Relative abundance (%): 0.03

GCA_000163695.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 1
Relative abundance (%): 0.06

GCA_000163695.1 (MAGs)
MAGs: CM_periimplantitis__SP_125SPI_T016__bin_4.fa
Ecosystem: Human

GCA_000163695.1 (MAGs)
MAGs: 3300006249_13.fna
Ecosystem: Generic

GCA_000163695.1 (MAGs)
MAGs: 3300007499_5.fna
Ecosystem: Generic

GCA_000163695.1 (MAGs)
MAGs: 3300007500_17.fna
Ecosystem: Generic

GCA_000163695.1 (MAGs)
MAGs: 3300007646_15.fna
Ecosystem: Generic

GCA_000163695.1 (MAGs)
MAGs: 3300007666_10.fna
Ecosystem: Generic

GCA_000163695.1 (MAGs)
MAGs: 3300008139_11.fna
Ecosystem: Generic

GCA_000163695.1 (MAGs)
MAGs: 3300008480_20.fna
Ecosystem: Generic

GCA_000163695.1 (MAGs)
MAGs: 3300008486_17.fna
Ecosystem: Generic

GCA_000163695.1 (MAGs)
MAGs: 3300008541_20.fna
Ecosystem: Generic

GCA_000163695.1 (MAGs)
MAGs: 3300008679_14.fna
Ecosystem: Generic

GCA_000163695.1 (MAGs)
MAGs: 3300008743_14.fna
Ecosystem: Generic

GCA_000163695.1 (MAGs)
MAGs: 3300011970_9.fna
Ecosystem: Generic

GCA_000163695.1 (MAGs)
MAGs: 3300011981_14.fna
Ecosystem: Generic

GCA_000163695.1 (MAGs)
MAGs: 3300011985_23.fna
Ecosystem: Generic