GCA_000161775.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Ruegeria spongiae
Comparison to close relatives: Thalassobius gelatinovorus
Comparison to close relatives: Cognatishimia activa
Comparison to close relatives: Leisingera aquaemixtae
Comparison to close relatives: Poseidonocella pacifica
Comparison to close relatives: Shimia marina
Comparison to close relatives: Epibacterium horizontis
Comparison to close relatives: Ruegeria alba
Comparison to close relatives: Phaeobacter piscinae
Comparison to close relatives: Ruegeria haliotis
Comparison to close relatives: Ruegeria lacuscaerulensis
Comparison to close relatives: Albibacillus kandeliae
Comparison to close relatives: Heliomarina baculiformis
Comparison to close relatives: Sediminimonas qiaohouensis
Comparison to close relatives: Antarcticimicrobium sediminis
Comparison to close relatives: Mangrovicoccus algicola
Comparison to close relatives: Pseudooceanicola lipolyticus
Comparison to close relatives: Ruegeria faecimaris
Comparison to close relatives: Marimonas lutisalis
Comparison to close relatives: Shimia sediminis
Comparison to close relatives: Ruegeria profundi
Comparison to close relatives: Actibacterium atlanticum
Comparison to close relatives: Pelagimonas phthalicica
Comparison to close relatives: Thiosulfatihalobacter marinus
Comparison to close relatives: Epibacterium scottomollicae
Comparison to close relatives: Cribrihabitans marinus
Comparison to close relatives: Epibacterium mobile
Comparison to close relatives: Ruegeria atlantica
Comparison to close relatives: Ruegeria denitrificans
Comparison to close relatives: Ruegeria marisrubri
Comparison to close relatives: Arenibacterium halophilum
Comparison to close relatives: Pseudoruegeria aquimaris
Comparison to close relatives: Leisingera caerulea
Comparison to close relatives: Litoreibacter roseus
Comparison to close relatives: Ruegeria meteori
Comparison to close relatives: Leisingera thetidis
Comparison to close relatives: Paracoccus sediminicola
Comparison to close relatives: Roseivivax isoporae
Comparison to close relatives: Ruegeria sediminis
Comparison to close relatives: Cribrihabitans neustonicus
Comparison to close relatives: Ruegeria arenilitoris
Comparison to close relatives: Lutimaribacter marinistellae
Comparison to close relatives: Ruegeria conchae
Comparison to close relatives: Ruegeria meonggei
Comparison to close relatives: Ruegeria halocynthiae
Comparison to close relatives: Ruegeria pomeroyi
Comparison to close relatives: Donghicola mangrovi
Comparison to close relatives: Ruegeria intermedia
Comparison to close relatives: Poseidonocella sedimentorum
Comparison to close relatives: Shimia ponticola
Comparison to close relatives: Tritonibacter scottomollicae
Comparison to close relatives: Tritonibacter horizontis
Comparison to close relatives: Tritonibacter mobilis
Comparison to close relatives: Thalassovita gelatinovora
CAZyme: GH0
CAZyme: GH13
CAZyme: GH6
CAZyme: GH1
CAZyme: GH24
CAZyme: GH23
CAZyme: GH28
CAZyme: GH42
CAZyme: GH10
CAZyme: GH154
CAZyme: GH101
CAZyme: GH36
CAZyme: GH4
CAZyme: GH103
CAZyme: GH63
CAZyme: GH135
CAZyme: GH43
CAZyme: GH16
CAZyme: GH102
CAZyme: GH19
CAZyme: GH3
CAZyme: GH25

GCA_000161775.1 (CAZyme)
CAZyme: GH108
Occurance: 2

GCA_000161775.1 (CAZyme)
CAZyme: GT1
Occurance: 11

GCA_000161775.1 (CAZyme)
CAZyme: GT13
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: GT51
Occurance: 4

GCA_000161775.1 (CAZyme)
CAZyme: GT107
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: GT2
Occurance: 18

GCA_000161775.1 (CAZyme)
CAZyme: GT4
Occurance: 17

GCA_000161775.1 (CAZyme)
CAZyme: GT14
Occurance: 2

GCA_000161775.1 (CAZyme)
CAZyme: GT7
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_000161775.1 (CAZyme)
CAZyme: GT32
Occurance: 3

GCA_000161775.1 (CAZyme)
CAZyme: GT26
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: GT30
Occurance: 2

GCA_000161775.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: GT21
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: GT0
Occurance: 2

GCA_000161775.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: GT25
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: PL0
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: CE9
Occurance: 2

GCA_000161775.1 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: CE11
Occurance: 3

GCA_000161775.1 (CAZyme)
CAZyme: CBM20
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: CBM50
Occurance: 15

GCA_000161775.1 (CAZyme)
CAZyme: CBM13
Occurance: 3

GCA_000161775.1 (CAZyme)
CAZyme: CBM56
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: CBM5
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000161775.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_000161775.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000161775.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000161775.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000161775.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000161775.1 (Pathway)
Pathway: Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Metabolic module: M00008

GCA_000161775.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000161775.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000161775.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000161775.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000161775.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000161775.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000161775.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000161775.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000161775.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000161775.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000161775.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000161775.1 (Pathway)
Pathway: Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate
Metabolic module: M00046

GCA_000161775.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000161775.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000161775.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000161775.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000161775.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000161775.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000161775.1 (Pathway)
Pathway: C5 isoprenoid biosynthesis, non-mevalonate pathway
Metabolic module: M00096

GCA_000161775.1 (Pathway)
Pathway: Acylglycerol degradation
Metabolic module: M00098

GCA_000161775.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000161775.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000161775.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000161775.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_000161775.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000161775.1 (Pathway)
Pathway: Polyamine biosynthesis, arginine => ornithine => putrescine
Metabolic module: M00134

GCA_000161775.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000161775.1 (Pathway)
Pathway: Cytochrome c oxidase, cbb3-type
Metabolic module: M00156

GCA_000161775.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000161775.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), light
Metabolic module: M00169

GCA_000161775.1 (Pathway)
Pathway: Ethylmalonyl pathway
Metabolic module: M00373

GCA_000161775.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000161775.1 (Pathway)
Pathway: Denitrification, nitrate => nitrogen
Metabolic module: M00529

GCA_000161775.1 (Pathway)
Pathway: Dissimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00530

GCA_000161775.1 (Pathway)
Pathway: Assimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00531

GCA_000161775.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000161775.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000161775.1 (Pathway)
Pathway: Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP
Metabolic module: M00572

GCA_000161775.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000161775.1 (Pathway)
Pathway: Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA
Metabolic module: M00741

GCA_000161775.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000161775.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000161775.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000161775.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000161775.1 (Pathway)
Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA
Metabolic module: M00999

GCA_000161775.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000161775.1 (Pathway)
Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf
Metabolic module: M01004

GCA_000161775.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCA_000161775.1 (Pathway)
Pathway: Guanine ribonucleotide degradation, GMP => Urate
Metabolic module: M00959

GCA_000161775.1 (Pathway)
Pathway: Adenine ribonucleotide degradation, AMP => Urate
Metabolic module: M00958

GCA_000161775.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000161775.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_000161775.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000161775.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000161775.1 (Pathway)
Pathway: Histidine degradation, histidine => N-formiminoglutamate => glutamate
Metabolic module: M00045

GCA_000161775.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000161775.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000161775.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000161775.1 (Pathway)
Pathway: beta-Oxidation
Metabolic module: M00087

GCA_000161775.1 (Pathway)
Pathway: C1-unit interconversion, prokaryotes
Metabolic module: M00140

GCA_000161775.1 (Pathway)
Pathway: Betaine biosynthesis, choline => betaine
Metabolic module: M00555

GCA_000161775.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_000161775.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_000161775.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000161775.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000161775.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000161775.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000161775.1 (Pathway)
Pathway: Isoleucine degradation
Metabolic module: MF0036

GCA_000161775.1 (Pathway)
Pathway: Leucine degradation
Metabolic module: MF0037

GCA_000161775.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_000161775.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000161775.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000161775.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_000161775.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000161775.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000161775.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000161775.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000161775.1 (Pathway)
Pathway: Arginine degradation IV
Metabolic module: MF0054

GCA_000161775.1 (Pathway)
Pathway: Arginine degradation V
Metabolic module: MF0055

GCA_000161775.1 (Pathway)
Pathway: Histidine degradation
Metabolic module: MF0056

GCA_000161775.1 (Pathway)
Pathway: Entner-Doudoroff pathway
Metabolic module: MF0066

GCA_000161775.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_000161775.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000161775.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_000161775.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000161775.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_000161775.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 2
Relative abundance (%): 0.06

GCA_000161775.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.01

GCA_000161775.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0.6
Relative abundance (%): 0.08

GCA_000161775.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 5.3
Relative abundance (%): 1.84

GCA_000161775.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 69
Relative abundance (%): 4.71

GCA_000161775.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 2.5
Relative abundance (%): 0.02

GCA_000161775.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 3.2
Relative abundance (%): 0.05

GCA_000161775.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 31
Relative abundance (%): 3.15

GCA_000161775.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 6.8
Relative abundance (%): 1.54

GCA_000161775.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 2.9
Relative abundance (%): 0.22

GCA_000161775.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.24

GCA_000161775.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 10.5
Relative abundance (%): 0.79

GCA_000161775.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 8.3
Relative abundance (%): 0.39

GCA_000161775.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 2.9
Relative abundance (%): 0.02

GCA_000161775.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 25.2
Relative abundance (%): 0.31

GCA_000161775.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.19

GCA_000161775.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 2.3
Relative abundance (%): 0.03

GCA_000161775.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 2.6
Relative abundance (%): 5.36

GCA_000161775.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.12

GCA_000161775.1 (MAGs)
MAGs: no MAG matches found