GCA_000154345.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Clostridium leptum
Comparison to close relatives: Caproiciproducens galactitolivorans
Comparison to close relatives: Clostridium jeddahense
Comparison to close relatives: Hydrogeniiclostridium hominis
Comparison to close relatives: Caproicibacterium amylolyticum
Comparison to close relatives: Solibaculum mannosilyticum
Comparison to close relatives: Acutalibacter muris
Comparison to close relatives: Clostridium sporosphaeroides
Comparison to close relatives: Caproicibacterium lactatifermentans
Comparison to close relatives: Clostridium facile
Comparison to close relatives: Merdimmobilis hominis
Comparison to close relatives: Clostridium methylpentosum
Comparison to close relatives: Zongyangia hominis
Comparison to close relatives: Massiliimalia timonensis
Comparison to close relatives: Ethanoligenens harbinense
Comparison to close relatives: Huintestinicola butyrica
Comparison to close relatives: Hominimerdicola aceti
Comparison to close relatives: Massiliimalia massiliensis
Comparison to close relatives: Anaerotruncus colihominis
Comparison to close relatives: Agathobaculum butyriciproducens
Comparison to close relatives: Negativibacillus massiliensis
Comparison to close relatives: Fumia xinanensis
Comparison to close relatives: Harryflintia acetispora
Comparison to close relatives: Ruthenibacterium lactatiformans
Comparison to close relatives: Tepidibaculum saccharolyticum
Comparison to close relatives: Youxingia wuxianensis
Comparison to close relatives: Intestinimonas aquisgranensis
Comparison to close relatives: Clostridium cellulosi
Comparison to close relatives: Butyricicoccus faecihominis
Comparison to close relatives: Hydrogenoanaerobacterium saccharovorans
Comparison to close relatives: Paludihabitans psychrotolerans
Comparison to close relatives: Anaerofilum hominis
Comparison to close relatives: Gemmiger gallinarum
Comparison to close relatives: Pseudoflavonifractor capillosus
Comparison to close relatives: Subdoligranulum variabile
Comparison to close relatives: Intestinimonas butyriciproducens
Comparison to close relatives: Butyricicoccus pullicaecorum
Comparison to close relatives: Agathobaculum ammoniilyticum
Comparison to close relatives: Lawsonibacter asaccharolyticus
Comparison to close relatives: Acetanaerobacterium elongatum
Comparison to close relatives: Lawsonibacter hominis
Comparison to close relatives: Butyricicoccus porcorum
Comparison to close relatives: Intestinimonas massiliensis
Comparison to close relatives: Flavonifractor plautii
Comparison to close relatives: Fournierella massiliensis
Comparison to close relatives: Eubacterium coprostanoligenes
Comparison to close relatives: Lawsonibacter faecis
Comparison to close relatives: Gemmiger formicilis
Comparison to close relatives: Flintibacter muris
Comparison to close relatives: Muriventricola aceti
Comparison to close relatives: Faecalispora jeddahensis
Comparison to close relatives: Faecalispora sporosphaeroides
Carbon source: starch
Carbon source: cellulose
CAZyme: GH4
CAZyme: GH39
CAZyme: GH141
CAZyme: GH78
CAZyme: GH13
CAZyme: GH38
CAZyme: GH2
CAZyme: GH6
CAZyme: GH95
CAZyme: GH31
CAZyme: GH116
CAZyme: GH5
CAZyme: GH3
CAZyme: GH36
CAZyme: GH65
CAZyme: GH151
CAZyme: GH29
CAZyme: GH35
CAZyme: GH42
CAZyme: GH120
CAZyme: GH127
CAZyme: GH28

GCA_000154345.1 (CAZyme)
CAZyme: GH32
Occurance: 3

GCA_000154345.1 (CAZyme)
CAZyme: GH18
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: GH43
Occurance: 4

GCA_000154345.1 (CAZyme)
CAZyme: GH33
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: GH51
Occurance: 6

GCA_000154345.1 (CAZyme)
CAZyme: GH77
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: GH0
Occurance: 6

GCA_000154345.1 (CAZyme)
CAZyme: GH30
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: GH25
Occurance: 2

GCA_000154345.1 (CAZyme)
CAZyme: GH23
Occurance: 5

GCA_000154345.1 (CAZyme)
CAZyme: GH10
Occurance: 2

GCA_000154345.1 (CAZyme)
CAZyme: GH16
Occurance: 6

GCA_000154345.1 (CAZyme)
CAZyme: GH1
Occurance: 6

GCA_000154345.1 (CAZyme)
CAZyme: GH19
Occurance: 2

GCA_000154345.1 (CAZyme)
CAZyme: GH105
Occurance: 14

GCA_000154345.1 (CAZyme)
CAZyme: GH73
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: GH130
Occurance: 2

GCA_000154345.1 (CAZyme)
CAZyme: GH114
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: GT2
Occurance: 21

GCA_000154345.1 (CAZyme)
CAZyme: GT13
Occurance: 2

GCA_000154345.1 (CAZyme)
CAZyme: GT35
Occurance: 2

GCA_000154345.1 (CAZyme)
CAZyme: GT51
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: GT4
Occurance: 11

GCA_000154345.1 (CAZyme)
CAZyme: GT22
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: GT5
Occurance: 2

GCA_000154345.1 (CAZyme)
CAZyme: GT28
Occurance: 5

GCA_000154345.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: GT61
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: GT8
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: GT0
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: GT26
Occurance: 2

GCA_000154345.1 (CAZyme)
CAZyme: CE9
Occurance: 2

GCA_000154345.1 (CAZyme)
CAZyme: CE12
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: CE0
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: CE4
Occurance: 2

GCA_000154345.1 (CAZyme)
CAZyme: CE1
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_000154345.1 (CAZyme)
CAZyme: CBM35
Occurance: 5

GCA_000154345.1 (CAZyme)
CAZyme: CBM50
Occurance: 15

GCA_000154345.1 (CAZyme)
CAZyme: CBM2
Occurance: 3

GCA_000154345.1 (CAZyme)
CAZyme: CBM48
Occurance: 4

GCA_000154345.1 (CAZyme)
CAZyme: CBM66
Occurance: 1

GCA_000154345.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_000154345.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000154345.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000154345.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000154345.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000154345.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000154345.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000154345.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000154345.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000154345.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000154345.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000154345.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000154345.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000154345.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000154345.1 (Pathway)
Pathway: C5 isoprenoid biosynthesis, non-mevalonate pathway
Metabolic module: M00096

GCA_000154345.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000154345.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000154345.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCA_000154345.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, bacteria
Metabolic module: M00364

GCA_000154345.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000154345.1 (Pathway)
Pathway: Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Metabolic module: M00527

GCA_000154345.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000154345.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_000154345.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_000154345.1 (Pathway)
Pathway: Vancomycin resistance, D-Ala-D-Lac type
Metabolic module: M00651

GCA_000154345.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000154345.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000154345.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCA_000154345.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000154345.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_000154345.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000154345.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000154345.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000154345.1 (Pathway)
Pathway: C1-unit interconversion, prokaryotes
Metabolic module: M00140

GCA_000154345.1 (Pathway)
Pathway: Arabinoxylan degradation
Metabolic module: MF0001

GCA_000154345.1 (Pathway)
Pathway: Fructan degradation
Metabolic module: MF0002

GCA_000154345.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_000154345.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_000154345.1 (Pathway)
Pathway: Fructose degradation
Metabolic module: MF0015

GCA_000154345.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000154345.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000154345.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000154345.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000154345.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000154345.1 (Pathway)
Pathway: Glycolysis (preparatory phase)
Metabolic module: MF0067

GCA_000154345.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCA_000154345.1 (Pathway)
Pathway: Pyruvate:formate lyase
Metabolic module: MF0074

GCA_000154345.1 (Pathway)
Pathway: Lactaldehyde degradation
Metabolic module: MF0078

GCA_000154345.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000154345.1 (Pathway)
Pathway: Ethanol production I
Metabolic module: MF0090

GCA_000154345.1 (Pathway)
Pathway: Lactate production
Metabolic module: MF0092

GCA_000154345.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_000154345.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 5.6
Relative abundance (%): 0.33

GCA_000154345.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 3
Relative abundance (%): 0.97

GCA_000154345.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 1.2
Relative abundance (%): 0.01

GCA_000154345.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000154345.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 13.4
Relative abundance (%): 0.02

GCA_000154345.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 20.8
Relative abundance (%): 0.02

GCA_000154345.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.01

GCA_000154345.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.3
Relative abundance (%): 0

GCA_000154345.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.14

GCA_000154345.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.01

GCA_000154345.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 14.6
Relative abundance (%): 0.01

GCA_000154345.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 30.8
Relative abundance (%): 0.02

GCA_000154345.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.6
Relative abundance (%): 0

GCA_000154345.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.02

GCA_000154345.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.01

GCA_000154345.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 1.3
Relative abundance (%): 0.07

GCA_000154345.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.03

GCA_000154345.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 38.6
Relative abundance (%): 0.2

GCA_000154345.1 (MAGs)
MAGs: KosticAD_2015__PRJNA231909_3109940__bin_14.fa
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR2912789_bin.5.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR5056794_bin.88.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: ERR1620341_bin.17.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: DRR042328_bin.35.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR1197614_bin.14.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR3917563_bin.49.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: ERR1620342_bin.36.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR3917691_bin.2.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR5057015_bin.49.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR1196624_bin.5.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: ERR1293895_bin.9.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: ERR1018197_bin.49.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR5056868_bin.58.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR3737020_bin.17.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: ERR1293897_bin.16.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR6028588_bin.17.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR5275395_bin.56.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR1761692_bin.29.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR5056948_bin.24.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR5057033_bin.4.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: ERR1018212_bin.3.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR5056777_bin.7.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR5056973_bin.121.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: ERR1293894_bin.4.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: DRR042360_bin.42.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR1197623_bin.21.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: ERR688533_bin.57.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: ERR1018198_bin.60.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR1197585_bin.22.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR6028526_bin.18.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR6028633_bin.19.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR5127761_bin.4.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: ERR1190571_bin.88.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR1197635_bin.12.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR1197021_bin.29.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: ERR525795_bin.40.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR4481807_bin.52.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: DRR042361_bin.25.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR6028578_bin.1.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR3736994_bin.26.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR3917619_bin.36.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR1197011_bin.12.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR3917687_bin.3.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR1197062_bin.17.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: SRR5275437_bin.1.fna
Ecosystem: Human

GCA_000154345.1 (MAGs)
MAGs: 3300029040_7.fna
Ecosystem: Generic

GCA_000154345.1 (MAGs)
MAGs: 3300029346_10.fna
Ecosystem: Generic

GCA_000154345.1 (MAGs)
MAGs: 3300029369_14.fna
Ecosystem: Generic

GCA_000154345.1 (MAGs)
MAGs: 3300029370_10.fna
Ecosystem: Generic

GCA_000154345.1 (MAGs)
MAGs: 3300029372_13.fna
Ecosystem: Generic

GCA_000154345.1 (MAGs)
MAGs: 3300029373_10.fna
Ecosystem: Generic

GCA_000154345.1 (MAGs)
MAGs: 3300029394_15.fna
Ecosystem: Generic

GCA_000154345.1 (MAGs)
MAGs: 3300029402_12.fna
Ecosystem: Generic

GCA_000154345.1 (MAGs)
MAGs: 3300029405_11.fna
Ecosystem: Generic

GCA_000154345.1 (MAGs)
MAGs: 3300029412_12.fna
Ecosystem: Generic

GCA_000154345.1 (MAGs)
MAGs: 3300029419_11.fna
Ecosystem: Generic

GCA_000154345.1 (MAGs)
MAGs: 3300029752_10.fna
Ecosystem: Generic

GCA_000154345.1 (MAGs)
MAGs: 3300029774_10.fna
Ecosystem: Generic