GCA_000153145.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Leifsonia rubra
Comparison to close relatives: Salinibacterium amurskyense
Comparison to close relatives: Rhodoglobus vestalii
Comparison to close relatives: Salinibacterium hongtaonis
Comparison to close relatives: Rhodoglobus aureus
Comparison to close relatives: Salinibacterium xinjiangense
Comparison to close relatives: Antiquaquibacter oligotrophicus
Comparison to close relatives: Microcella daejeonensis
Comparison to close relatives: Microcella flavibacter
Comparison to close relatives: Glaciihabitans tibetensis
Comparison to close relatives: Homoserinimonas aerilata
Comparison to close relatives: Marinisubtilis pacificus
Comparison to close relatives: Agreia pratensis
Comparison to close relatives: Herbiconiux solani
Comparison to close relatives: Microterricola pindariensis
Comparison to close relatives: Conyzicola lurida
Comparison to close relatives: Leifsonia bigeumensis
Comparison to close relatives: Leifsonia kafniensis
Comparison to close relatives: Leifsonia antarctica
Comparison to close relatives: Salinibacterium sedimenticola
Comparison to close relatives: Herbiconiux oxytropis
Comparison to close relatives: Microterricola viridarii
Comparison to close relatives: Schumannella luteola
Comparison to close relatives: Lacisediminihabitans profunda
Comparison to close relatives: Lysinibacter cavernae
Comparison to close relatives: Herbiconiux flava
Comparison to close relatives: Cryobacterium zongtaii
Comparison to close relatives: Schumannella soli
Comparison to close relatives: Agreia bicolorata
Comparison to close relatives: Plantibacter flavus
Comparison to close relatives: Arenivirga flava
Comparison to close relatives: Cryobacterium soli
Comparison to close relatives: Mycetocola zhujimingii
Comparison to close relatives: Leifsonia naganoensis
Comparison to close relatives: Frigoribacterium endophyticum
Comparison to close relatives: Herbiconiux ginsengi
Comparison to close relatives: Microcella alkalica
Comparison to close relatives: Leifsonia poae
Comparison to close relatives: Herbiconiux daphnes
Comparison to close relatives: Microcella putealis
Comparison to close relatives: Alpinimonas psychrophila
Comparison to close relatives: Pseudolysinimonas yzui
Comparison to close relatives: Okibacterium fritillariae
Comparison to close relatives: Microcella alkaliphila
Comparison to close relatives: Okibacterium endophyticum
Comparison to close relatives: Leifsonia williamsii
Comparison to close relatives: Aurantimicrobium minutum
Comparison to close relatives: Aurantimicrobium photophilum
Comparison to close relatives: Protaetiibacter intestinalis
Comparison to close relatives: Leifsonia virtsii
Comparison to close relatives: Microcella pacifica
Comparison to close relatives: Herbiconiux daphne
Carbon source: cellulose
CAZyme: GH13
CAZyme: GH5
CAZyme: GH6
CAZyme: GH31
CAZyme: GH65
CAZyme: GH16
CAZyme: GH28
CAZyme: GH15
CAZyme: GH25
CAZyme: GH18
CAZyme: GH101
CAZyme: GH20
CAZyme: GH1
CAZyme: GH84
CAZyme: GH73
CAZyme: GH3
CAZyme: GH0
CAZyme: GH152
CAZyme: GH105
CAZyme: GH19
CAZyme: GH23
CAZyme: GT2
CAZyme: GT51

GCA_000153145.1 (CAZyme)
CAZyme: GT4
Occurance: 25

GCA_000153145.1 (CAZyme)
CAZyme: GT1
Occurance: 10

GCA_000153145.1 (CAZyme)
CAZyme: GT39
Occurance: 1

GCA_000153145.1 (CAZyme)
CAZyme: GT20
Occurance: 2

GCA_000153145.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_000153145.1 (CAZyme)
CAZyme: GT28
Occurance: 3

GCA_000153145.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_000153145.1 (CAZyme)
CAZyme: GT0
Occurance: 4

GCA_000153145.1 (CAZyme)
CAZyme: PL0
Occurance: 1

GCA_000153145.1 (CAZyme)
CAZyme: CE14
Occurance: 3

GCA_000153145.1 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_000153145.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_000153145.1 (CAZyme)
CAZyme: CE12
Occurance: 3

GCA_000153145.1 (CAZyme)
CAZyme: CBM5
Occurance: 4

GCA_000153145.1 (CAZyme)
CAZyme: CBM32
Occurance: 1

GCA_000153145.1 (CAZyme)
CAZyme: CBM50
Occurance: 7

GCA_000153145.1 (CAZyme)
CAZyme: CBM38
Occurance: 1

GCA_000153145.1 (CAZyme)
CAZyme: CBM2
Occurance: 5

GCA_000153145.1 (CAZyme)
CAZyme: CBM48
Occurance: 3

GCA_000153145.1 (CAZyme)
CAZyme: CBM0
Occurance: 1

GCA_000153145.1 (CAZyme)
CAZyme: CBM13
Occurance: 1

GCA_000153145.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000153145.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000153145.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000153145.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000153145.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000153145.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000153145.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000153145.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000153145.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000153145.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000153145.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000153145.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000153145.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000153145.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000153145.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000153145.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000153145.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000153145.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000153145.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000153145.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000153145.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000153145.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000153145.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000153145.1 (Pathway)
Pathway: C5 isoprenoid biosynthesis, non-mevalonate pathway
Metabolic module: M00096

GCA_000153145.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000153145.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000153145.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000153145.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000153145.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000153145.1 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_000153145.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000153145.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, bacteria
Metabolic module: M00364

GCA_000153145.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, archaea
Metabolic module: M00365

GCA_000153145.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000153145.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000153145.1 (Pathway)
Pathway: UDP-Gal biosynthesis, Gal => UDP-Gal
Metabolic module: M00554

GCA_000153145.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_000153145.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000153145.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_000153145.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000153145.1 (Pathway)
Pathway: Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P
Metabolic module: M00632

GCA_000153145.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000153145.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000153145.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000153145.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCA_000153145.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCA_000153145.1 (Pathway)
Pathway: Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme
Metabolic module: M00926

GCA_000153145.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000153145.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000153145.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000153145.1 (Pathway)
Pathway: GDP-D-Rha4N biosynthesis, Fru-6P => GDP-D-Rha4N
Metabolic module: M01006

GCA_000153145.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_000153145.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000153145.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_000153145.1 (Pathway)
Pathway: Histidine degradation, histidine => N-formiminoglutamate => glutamate
Metabolic module: M00045

GCA_000153145.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000153145.1 (Pathway)
Pathway: Fructose degradation
Metabolic module: MF0015

GCA_000153145.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000153145.1 (Pathway)
Pathway: Xylose degradation
Metabolic module: MF0021

GCA_000153145.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000153145.1 (Pathway)
Pathway: Aspartate degradation II
Metabolic module: MF0029

GCA_000153145.1 (Pathway)
Pathway: Alanine degradation I
Metabolic module: MF0033

GCA_000153145.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000153145.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000153145.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_000153145.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000153145.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000153145.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_000153145.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000153145.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000153145.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000153145.1 (Pathway)
Pathway: Histidine degradation
Metabolic module: MF0056

GCA_000153145.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000153145.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_000153145.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000153145.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000153145.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000153145.1 (Pathway)
Pathway: 4-aminobutyrate degradation
Metabolic module: MF0076

GCA_000153145.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_000153145.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000153145.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 16.6
Relative abundance (%): 0.29

GCA_000153145.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 2.4
Relative abundance (%): 0.02

GCA_000153145.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.02

GCA_000153145.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 39.6
Relative abundance (%): 0.41

GCA_000153145.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 4.6
Relative abundance (%): 0.44

GCA_000153145.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 7.6
Relative abundance (%): 0.11

GCA_000153145.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 9.5
Relative abundance (%): 0.03

GCA_000153145.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 7.3
Relative abundance (%): 0.31

GCA_000153145.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 47
Relative abundance (%): 0.76

GCA_000153145.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 46.4
Relative abundance (%): 0.89

GCA_000153145.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 1.5
Relative abundance (%): 0.03

GCA_000153145.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 55.5
Relative abundance (%): 0.39

GCA_000153145.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 35.7
Relative abundance (%): 0.43

GCA_000153145.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 72.3
Relative abundance (%): 0.54

GCA_000153145.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 17.1
Relative abundance (%): 1

GCA_000153145.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 1.2
Relative abundance (%): 0.02

GCA_000153145.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 10
Relative abundance (%): 0.16

GCA_000153145.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 7.2
Relative abundance (%): 0.24

GCA_000153145.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 1.2
Relative abundance (%): 0.14

GCA_000153145.1 (MAGs)
MAGs: no MAG matches found