GCA_000143165.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Dehalogenimonas lykanthroporepellens
Comparison to close relatives: Dehalogenimonas alkenigignens
Comparison to close relatives: Dehalogenimonas etheniformans
Comparison to close relatives: Dehalogenimonas formicexedens
Comparison to close relatives: Dehalococcoides mccartyi
Comparison to close relatives: Tepidiforma bonchosmolovskayae
Comparison to close relatives: Aggregatilinea lenta
Comparison to close relatives: Thermomarinilinea lacunifontana
Comparison to close relatives: Muriventricola aceti
Comparison to close relatives: Anaerolinea thermophila
Comparison to close relatives: Caldicoprobacter faecalis
Comparison to close relatives: Acidimicrobium ferrooxidans
Comparison to close relatives: Mahella australiensis
Comparison to close relatives: Parvivirga hydrogeniphila
Comparison to close relatives: Egibacter rhizosphaerae
Comparison to close relatives: Amycolatopsis tolypomycina
Comparison to close relatives: Aciditerrimonas ferrireducens
Comparison to close relatives: Clostridium thermobutyricum
Comparison to close relatives: Oceanirhabdus sediminicola
Comparison to close relatives: Flintibacter muris
Comparison to close relatives: Flavonifractor plautii
Comparison to close relatives: Clostridium bovifaecis
Comparison to close relatives: Amycolatopsis kentuckyensis
Comparison to close relatives: Laceyella sacchari
Comparison to close relatives: Lihuaxuella thermophila
Comparison to close relatives: Clostridium thermopalmarium
Comparison to close relatives: Amycolatopsis halotolerans
Comparison to close relatives: Mageeibacillus indolicus
Comparison to close relatives: Amycolatopsis acididurans
Comparison to close relatives: Clostridium amylolyticum
Comparison to close relatives: Thermoclostridium stercorarium subsp. thermolacticum
Comparison to close relatives: Ilyobacter delafieldii
Comparison to close relatives: Pseudoflavonifractor capillosus
Comparison to close relatives: Acetivibrio thermocellus
Comparison to close relatives: Laceyella thermophila
Comparison to close relatives: Acetivibrio cellulolyticus
Comparison to close relatives: Thermoflavimicrobium dichotomicum
Comparison to close relatives: Desulfofundulus thermocisternus
Comparison to close relatives: Desulfovectis peckii
Comparison to close relatives: Thermoclostridium stercorarium subsp. leptospartum
Comparison to close relatives: Acetivibrio aldrichii
Comparison to close relatives: Clostridium polynesiense
Comparison to close relatives: Saccharothrix lopnurensis
Comparison to close relatives: Longispora urticae
Comparison to close relatives: Micromonospora costi
Comparison to close relatives: Clostridium cellulovorans
Comparison to close relatives: Ercella succinigenes
Comparison to close relatives: Desulfofundulus solfataricus
Comparison to close relatives: Desulfofundulus thermobenzoicus
Comparison to close relatives: Desulfofundulus australicus
Comparison to close relatives: Thermoclostridium stercorarium
Carbon source: starch
CAZyme: GH13
CAZyme: GH38
CAZyme: GH6
CAZyme: GH15
CAZyme: GH28
CAZyme: GH101
CAZyme: GH19
CAZyme: GH0
CAZyme: GH23
CAZyme: GH43
CAZyme: GT13
CAZyme: GT35
CAZyme: GT55
CAZyme: GT4
CAZyme: GT1
CAZyme: GT2
CAZyme: GT5
CAZyme: GT39
CAZyme: CE9
CAZyme: CE14
CAZyme: CBM50
CAZyme: CBM2
CAZyme: CBM13
CAZyme: CBM48

GCA_000143165.1 (CAZyme)
CAZyme: CBM5
Occurance: 3

GCA_000143165.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000143165.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000143165.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000143165.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000143165.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000143165.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000143165.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000143165.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000143165.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000143165.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000143165.1 (Pathway)
Pathway: Ectoine biosynthesis, aspartate => ectoine
Metabolic module: M00033

GCA_000143165.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000143165.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000143165.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000143165.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000143165.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000143165.1 (Pathway)
Pathway: Phosphatidylcholine (PC) biosynthesis, PE => PC
Metabolic module: M00091

GCA_000143165.1 (Pathway)
Pathway: Acylglycerol degradation
Metabolic module: M00098

GCA_000143165.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000143165.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000143165.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_000143165.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000143165.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000143165.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000143165.1 (Pathway)
Pathway: Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Metabolic module: M00527

GCA_000143165.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000143165.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000143165.1 (Pathway)
Pathway: Heme biosynthesis, archaea, siroheme => heme
Metabolic module: M00847

GCA_000143165.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCA_000143165.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000143165.1 (Pathway)
Pathway: Glycogen biosynthesis, glucose-1P => glycogen/starch
Metabolic module: M00854

GCA_000143165.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000143165.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000143165.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000143165.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000143165.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000143165.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000143165.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000143165.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000143165.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000143165.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 1.2
Relative abundance (%): 0

GCA_000143165.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000143165.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000143165.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000143165.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000143165.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.6
Relative abundance (%): 0.01

GCA_000143165.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 1.3
Relative abundance (%): 0.01

GCA_000143165.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000143165.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.01

GCA_000143165.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.01

GCA_000143165.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0.2
Relative abundance (%): 0

GCA_000143165.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 2.4
Relative abundance (%): 0.01

GCA_000143165.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_000143165.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000143165.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000143165.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000143165.1 (MAGs)
MAGs: no MAG matches found