GCA_000026125.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Herminiimonas arsenicoxydans
Comparison to close relatives: Herminiimonas saxobsidens
Comparison to close relatives: Herminiimonas contaminans
Comparison to close relatives: Herminiimonas glaciei
Comparison to close relatives: Herminiimonas fonticola
Comparison to close relatives: Herminiimonas aquatilis
Comparison to close relatives: Janthinobacterium agaricidamnosum
Comparison to close relatives: Oxalicibacterium solurbis
Comparison to close relatives: Janthinobacterium violaceinigrum
Comparison to close relatives: Aquaspirillum arcticum
Comparison to close relatives: Herbaspirillum frisingense
Comparison to close relatives: Duganella albus
Comparison to close relatives: Herbaspirillum huttiense subsp. huttiense
Comparison to close relatives: Herbaspirillum autotrophicum
Comparison to close relatives: Herbaspirillum aquaticum
Comparison to close relatives: Herbaspirillum rubrisubalbicans
Comparison to close relatives: Janthinobacterium lividum
Comparison to close relatives: Janthinobacterium aquaticum
Comparison to close relatives: Herbaspirillum lusitanum
Comparison to close relatives: Herbaspirillum rhizosphaerae
Comparison to close relatives: Herbaspirillum hiltneri
Comparison to close relatives: Collimonas silvisoli
Comparison to close relatives: Collimonas humicola
Comparison to close relatives: Janthinobacterium rivuli
Comparison to close relatives: Rugamonas aquatica
Comparison to close relatives: Glaciimonas singularis
Comparison to close relatives: Oxalicibacterium horti
Comparison to close relatives: Herbaspirillum chlorophenolicum
Comparison to close relatives: Herbaspirillum seropedicae
Comparison to close relatives: Rugamonas fusca
Comparison to close relatives: Rugamonas brunnea
Comparison to close relatives: Undibacterium rivi
Comparison to close relatives: Massilia antarctica
Comparison to close relatives: Rugamonas rivuli
Comparison to close relatives: Undibacterium terreum
Comparison to close relatives: Massilia atriviolacea
Comparison to close relatives: Massilia violaceinigra
Comparison to close relatives: Undibacterium nitidum
Comparison to close relatives: Duganella fentianensis
Comparison to close relatives: Herbaspirillum huttiense subsp. putei
Comparison to close relatives: Massilia frigida
Comparison to close relatives: Massilia rubra
Comparison to close relatives: Massilia mucilaginosa
Comparison to close relatives: Glaciimonas immobilis
Comparison to close relatives: Noviherbaspirillum aurantiacum
Comparison to close relatives: Massilia armeniaca
Comparison to close relatives: Massilia oculi
Comparison to close relatives: Noviherbaspirillum canariense
Comparison to close relatives: Noviherbaspirillum soli
Comparison to close relatives: Glaciimonas alpina
Comparison to close relatives: Herbaspirillum huttiense
Comparison to close relatives: Duganella alba
Comparison to close relatives: Pseudoduganella armeniaca
CAZyme: GH94
CAZyme: GH13
CAZyme: GH6
CAZyme: GH23
CAZyme: GH28
CAZyme: GH73
CAZyme: GH102
CAZyme: GH135
CAZyme: GH103
CAZyme: GH0
CAZyme: GH3
CAZyme: GH19
CAZyme: GH43
CAZyme: GH24
CAZyme: GT84
CAZyme: GT13
CAZyme: GT2
CAZyme: GT51
CAZyme: GT4
CAZyme: GT0
CAZyme: GT22
CAZyme: GT1
CAZyme: GT83

GCA_000026125.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_000026125.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_000026125.1 (CAZyme)
CAZyme: GT30
Occurance: 2

GCA_000026125.1 (CAZyme)
CAZyme: GT26
Occurance: 2

GCA_000026125.1 (CAZyme)
CAZyme: GT104
Occurance: 1

GCA_000026125.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_000026125.1 (CAZyme)
CAZyme: CE11
Occurance: 2

GCA_000026125.1 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_000026125.1 (CAZyme)
CAZyme: CBM20
Occurance: 2

GCA_000026125.1 (CAZyme)
CAZyme: CBM41
Occurance: 7

GCA_000026125.1 (CAZyme)
CAZyme: CBM50
Occurance: 24

GCA_000026125.1 (CAZyme)
CAZyme: CBM13
Occurance: 3

GCA_000026125.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_000026125.1 (CAZyme)
CAZyme: CBM32
Occurance: 1

GCA_000026125.1 (CAZyme)
CAZyme: CBM6
Occurance: 2

GCA_000026125.1 (CAZyme)
CAZyme: CBM48
Occurance: 2

GCA_000026125.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000026125.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000026125.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000026125.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000026125.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000026125.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000026125.1 (Pathway)
Pathway: Glyoxylate cycle
Metabolic module: M00012

GCA_000026125.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000026125.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000026125.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000026125.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000026125.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000026125.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000026125.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000026125.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000026125.1 (Pathway)
Pathway: Ectoine biosynthesis, aspartate => ectoine
Metabolic module: M00033

GCA_000026125.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000026125.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000026125.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000026125.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000026125.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000026125.1 (Pathway)
Pathway: CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Metabolic module: M00063

GCA_000026125.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000026125.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000026125.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000026125.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000026125.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000026125.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000026125.1 (Pathway)
Pathway: Pantothenate biosynthesis, valine/L-aspartate => pantothenate
Metabolic module: M00119

GCA_000026125.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000026125.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000026125.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_000026125.1 (Pathway)
Pathway: Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
Metabolic module: M00123

GCA_000026125.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000026125.1 (Pathway)
Pathway: NADH:quinone oxidoreductase, prokaryotes
Metabolic module: M00144

GCA_000026125.1 (Pathway)
Pathway: Fumarate reductase, prokaryotes
Metabolic module: M00150

GCA_000026125.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000026125.1 (Pathway)
Pathway: Cytochrome bd ubiquinol oxidase
Metabolic module: M00153

GCA_000026125.1 (Pathway)
Pathway: Cytochrome c oxidase, cbb3-type
Metabolic module: M00156

GCA_000026125.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000026125.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000026125.1 (Pathway)
Pathway: Cytochrome o ubiquinol oxidase
Metabolic module: M00417

GCA_000026125.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000026125.1 (Pathway)
Pathway: Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
Metabolic module: M00526

GCA_000026125.1 (Pathway)
Pathway: Dissimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00530

GCA_000026125.1 (Pathway)
Pathway: Assimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00531

GCA_000026125.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000026125.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000026125.1 (Pathway)
Pathway: Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP
Metabolic module: M00572

GCA_000026125.1 (Pathway)
Pathway: Imipenem resistance, repression of porin OprD
Metabolic module: M00745

GCA_000026125.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000026125.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000026125.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000026125.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000026125.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_000026125.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000026125.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc
Metabolic module: M00996

GCA_000026125.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000026125.1 (Pathway)
Pathway: UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc
Metabolic module: M01009

GCA_000026125.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_000026125.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000026125.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_000026125.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000026125.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000026125.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => HPP => tyrosine
Metabolic module: M00025

GCA_000026125.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000026125.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000026125.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000026125.1 (Pathway)
Pathway: Tetrahydrofolate biosynthesis, GTP => THF
Metabolic module: M00126

GCA_000026125.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000026125.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000026125.1 (Pathway)
Pathway: Aspartate degradation II
Metabolic module: MF0029

GCA_000026125.1 (Pathway)
Pathway: Alanine degradation I
Metabolic module: MF0033

GCA_000026125.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_000026125.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000026125.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000026125.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_000026125.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000026125.1 (Pathway)
Pathway: Glycerol degradation II
Metabolic module: MF0061

GCA_000026125.1 (Pathway)
Pathway: Glyoxylate bypass
Metabolic module: MF0063

GCA_000026125.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000026125.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000026125.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000026125.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000026125.1 (Pathway)
Pathway: Formate conversion
Metabolic module: MF0077

GCA_000026125.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_000026125.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000026125.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_000026125.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000026125.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 6.6
Relative abundance (%): 0.27

GCA_000026125.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 1.4
Relative abundance (%): 0.03

GCA_000026125.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 2.9
Relative abundance (%): 0.03

GCA_000026125.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 35
Relative abundance (%): 1.08

GCA_000026125.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 5.7
Relative abundance (%): 5.67

GCA_000026125.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 2.1
Relative abundance (%): 0.02

GCA_000026125.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 2.5
Relative abundance (%): 0.08

GCA_000026125.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 5.8
Relative abundance (%): 0.06

GCA_000026125.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 23.6
Relative abundance (%): 2.68

GCA_000026125.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 25
Relative abundance (%): 1.09

GCA_000026125.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 2
Relative abundance (%): 0.49

GCA_000026125.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 7.8
Relative abundance (%): 0.07

GCA_000026125.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 13.7
Relative abundance (%): 0.6

GCA_000026125.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 54.1
Relative abundance (%): 0.56

GCA_000026125.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 14.4
Relative abundance (%): 0.16

GCA_000026125.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 5.3
Relative abundance (%): 7.19

GCA_000026125.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 3.3
Relative abundance (%): 0.06

GCA_000026125.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 6.4
Relative abundance (%): 0.28

GCA_000026125.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 3.3
Relative abundance (%): 0.33

GCA_000026125.1 (MAGs)
MAGs: no MAG matches found