GCA_000023405.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Brachybacterium faecium
Comparison to close relatives: Brachybacterium atlanticum
Comparison to close relatives: Brachybacterium paraconglomeratum
Comparison to close relatives: Brachybacterium conglomeratum
Comparison to close relatives: Brachybacterium saurashtrense
Comparison to close relatives: Brachybacterium vulturis
Comparison to close relatives: Brachybacterium avium
Comparison to close relatives: Brachybacterium ginsengisoli
Comparison to close relatives: Brachybacterium sacelli
Comparison to close relatives: Brachybacterium aquaticum
Comparison to close relatives: Brachybacterium fresconis
Comparison to close relatives: Brachybacterium hainanense
Comparison to close relatives: Brachybacterium alimentarium
Comparison to close relatives: Brachybacterium squillarum
Comparison to close relatives: Brachybacterium kimchii
Comparison to close relatives: Brachybacterium tyrofermentans
Comparison to close relatives: Brachybacterium halotolerans
Comparison to close relatives: Brachybacterium huguangmaarense
Comparison to close relatives: Brachybacterium nesterenkovii
Comparison to close relatives: Brachybacterium rhamnosum
Comparison to close relatives: Brachybacterium subflavum
Comparison to close relatives: Brachybacterium muris
Comparison to close relatives: Brachybacterium phenoliresistens
Comparison to close relatives: Brachybacterium endophyticum
Comparison to close relatives: Brachybacterium zhongshanense
Comparison to close relatives: Brachybacterium horti
Comparison to close relatives: Helcobacillus massiliensis
Comparison to close relatives: Brachybacterium sillae
Comparison to close relatives: Dermabacter vaginalis
Comparison to close relatives: Devriesea agamarum
Comparison to close relatives: Dermabacter hominis
Comparison to close relatives: Arthrobacter crystallopoietes
Comparison to close relatives: Arthrobacter globiformis
Comparison to close relatives: Glutamicibacter halophytocola
Comparison to close relatives: Arthrobacter ipis
Comparison to close relatives: Glutamicibacter arilaitensis
Comparison to close relatives: Glutamicibacter endophyticus
Comparison to close relatives: Micrococcus terreus
Comparison to close relatives: Arthrobacter silvisoli
Comparison to close relatives: Flavimobilis rhizosphaerae
Comparison to close relatives: Terrabacter terrigena
Comparison to close relatives: Terrabacter lapilli
Comparison to close relatives: Citricoccus nitrophenolicus
Comparison to close relatives: Terrabacter tumescens
Comparison to close relatives: Sanguibacter keddieii
Comparison to close relatives: Ruania alba
Comparison to close relatives: Kocuria flava
Comparison to close relatives: Terrabacter carboxydivorans
Comparison to close relatives: Arthrobacter celericrescens
Comparison to close relatives: Kineosphaera limosa
Carbon source: starch
CAZyme: GH39
CAZyme: GH13
CAZyme: GH92
CAZyme: GH38
CAZyme: GH2
CAZyme: GH43
CAZyme: GH106
CAZyme: GH6
CAZyme: GH78
CAZyme: GH16
CAZyme: GH3
CAZyme: GH65
CAZyme: GH95
CAZyme: GH89
CAZyme: GH146
CAZyme: GH36
CAZyme: GH105
CAZyme: GH77
CAZyme: GH42
CAZyme: GH31
CAZyme: GH154
CAZyme: GH28
CAZyme: GH15
CAZyme: GH1
CAZyme: GH127

GCA_000023405.1 (CAZyme)
CAZyme: GH35
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: GH20
Occurance: 4

GCA_000023405.1 (CAZyme)
CAZyme: GH53
Occurance: 3

GCA_000023405.1 (CAZyme)
CAZyme: GH0
Occurance: 3

GCA_000023405.1 (CAZyme)
CAZyme: GH51
Occurance: 3

GCA_000023405.1 (CAZyme)
CAZyme: GH79
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: GH101
Occurance: 2

GCA_000023405.1 (CAZyme)
CAZyme: GH136
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: GH33
Occurance: 5

GCA_000023405.1 (CAZyme)
CAZyme: GH32
Occurance: 2

GCA_000023405.1 (CAZyme)
CAZyme: GH4
Occurance: 2

GCA_000023405.1 (CAZyme)
CAZyme: GH10
Occurance: 4

GCA_000023405.1 (CAZyme)
CAZyme: GH29
Occurance: 4

GCA_000023405.1 (CAZyme)
CAZyme: GH125
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: GH27
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: GH5
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: GH23
Occurance: 4

GCA_000023405.1 (CAZyme)
CAZyme: GH19
Occurance: 2

GCA_000023405.1 (CAZyme)
CAZyme: GH130
Occurance: 5

GCA_000023405.1 (CAZyme)
CAZyme: GH18
Occurance: 3

GCA_000023405.1 (CAZyme)
CAZyme: GH25
Occurance: 2

GCA_000023405.1 (CAZyme)
CAZyme: GH103
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: GT4
Occurance: 40

GCA_000023405.1 (CAZyme)
CAZyme: GT2
Occurance: 23

GCA_000023405.1 (CAZyme)
CAZyme: GT51
Occurance: 3

GCA_000023405.1 (CAZyme)
CAZyme: GT35
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: GT20
Occurance: 2

GCA_000023405.1 (CAZyme)
CAZyme: GT0
Occurance: 2

GCA_000023405.1 (CAZyme)
CAZyme: GT1
Occurance: 7

GCA_000023405.1 (CAZyme)
CAZyme: GT39
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_000023405.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: GT26
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: GT5
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: PL33
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: CE14
Occurance: 10

GCA_000023405.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: CE0
Occurance: 2

GCA_000023405.1 (CAZyme)
CAZyme: CE4
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: CE12
Occurance: 5

GCA_000023405.1 (CAZyme)
CAZyme: CE7
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: CBM35
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: CBM48
Occurance: 8

GCA_000023405.1 (CAZyme)
CAZyme: CBM13
Occurance: 4

GCA_000023405.1 (CAZyme)
CAZyme: CBM20
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: CBM0
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: CBM5
Occurance: 3

GCA_000023405.1 (CAZyme)
CAZyme: CBM50
Occurance: 12

GCA_000023405.1 (CAZyme)
CAZyme: CBM38
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: CBM2
Occurance: 5

GCA_000023405.1 (CAZyme)
CAZyme: CBM61
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000023405.1 (CAZyme)
CAZyme: CBM32
Occurance: 1

GCA_000023405.1 (Pathway)
Pathway: Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate
Metabolic module: M00001

GCA_000023405.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000023405.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000023405.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000023405.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000023405.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000023405.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000023405.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000023405.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000023405.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000023405.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000023405.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000023405.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000023405.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000023405.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000023405.1 (Pathway)
Pathway: Ectoine biosynthesis, aspartate => ectoine
Metabolic module: M00033

GCA_000023405.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000023405.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000023405.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000023405.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000023405.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000023405.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000023405.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000023405.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000023405.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000023405.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000023405.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000023405.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000023405.1 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_000023405.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000023405.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, bacteria
Metabolic module: M00364

GCA_000023405.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, archaea
Metabolic module: M00365

GCA_000023405.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000023405.1 (Pathway)
Pathway: Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
Metabolic module: M00526

GCA_000023405.1 (Pathway)
Pathway: Dissimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00530

GCA_000023405.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000023405.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000023405.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_000023405.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000023405.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000023405.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000023405.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000023405.1 (Pathway)
Pathway: Galactofuranan biosynthesis, decaprenyl phosphate + UDP-GlcNAc (+ dTDP-Rha/UDP-Galf) => GL-5
Metabolic module: M00888

GCA_000023405.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCA_000023405.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000023405.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000023405.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000023405.1 (Pathway)
Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf
Metabolic module: M01004

GCA_000023405.1 (Pathway)
Pathway: UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA
Metabolic module: M01014

GCA_000023405.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_000023405.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000023405.1 (Pathway)
Pathway: Pentose phosphate pathway (Pentose phosphate cycle)
Metabolic module: M00004

GCA_000023405.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_000023405.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000023405.1 (Pathway)
Pathway: Histidine degradation, histidine => N-formiminoglutamate => glutamate
Metabolic module: M00045

GCA_000023405.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000023405.1 (Pathway)
Pathway: Betaine biosynthesis, choline => betaine
Metabolic module: M00555

GCA_000023405.1 (Pathway)
Pathway: Arabinoxylan degradation
Metabolic module: MF0001

GCA_000023405.1 (Pathway)
Pathway: Fructan degradation
Metabolic module: MF0002

GCA_000023405.1 (Pathway)
Pathway: Starch degradation
Metabolic module: MF0005

GCA_000023405.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_000023405.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_000023405.1 (Pathway)
Pathway: Trehalose degradation II
Metabolic module: MF0012

GCA_000023405.1 (Pathway)
Pathway: Fructose degradation
Metabolic module: MF0015

GCA_000023405.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000023405.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000023405.1 (Pathway)
Pathway: Aspartate degradation II
Metabolic module: MF0029

GCA_000023405.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000023405.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000023405.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000023405.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_000023405.1 (Pathway)
Pathway: Glutamine degradation I
Metabolic module: MF0046

GCA_000023405.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000023405.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000023405.1 (Pathway)
Pathway: Histidine degradation
Metabolic module: MF0056

GCA_000023405.1 (Pathway)
Pathway: Bifidobacterium shunt
Metabolic module: MF0065

GCA_000023405.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000023405.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_000023405.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000023405.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000023405.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000023405.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_000023405.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000023405.1 (Pathway)
Pathway: Lactate production
Metabolic module: MF0092

GCA_000023405.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 12.9
Relative abundance (%): 0.32

GCA_000023405.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 1.4
Relative abundance (%): 0.17

GCA_000023405.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 3
Relative abundance (%): 0.05

GCA_000023405.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 10.4
Relative abundance (%): 0.08

GCA_000023405.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 8.3
Relative abundance (%): 0.76

GCA_000023405.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 20.3
Relative abundance (%): 0.67

GCA_000023405.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 18.3
Relative abundance (%): 4.08

GCA_000023405.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 3
Relative abundance (%): 0.35

GCA_000023405.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 10.9
Relative abundance (%): 0.09

GCA_000023405.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 8.1
Relative abundance (%): 0.48

GCA_000023405.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 2.7
Relative abundance (%): 1.02

GCA_000023405.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 7.3
Relative abundance (%): 0.01

GCA_000023405.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 11.8
Relative abundance (%): 0.1

GCA_000023405.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 8.3
Relative abundance (%): 0.59

GCA_000023405.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 3.7
Relative abundance (%): 0.16

GCA_000023405.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.58

GCA_000023405.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 7.6
Relative abundance (%): 0.11

GCA_000023405.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 26.5
Relative abundance (%): 0.88

GCA_000023405.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 2.2
Relative abundance (%): 0.11

GCA_000023405.1 (MAGs)
MAGs: DHCMJ07802__metabat2_high_PE.028.contigs.fa
Ecosystem: Chicken_(Gallus_gallus)