GCA_000018565.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Herpetosiphon aurantiacus
Comparison to close relatives: Herpetosiphon llansteffanensis
Comparison to close relatives: Herpetosiphon giganteus
Comparison to close relatives: Herpetosiphon gulosus
Comparison to close relatives: Herpetosiphon geysericola
Comparison to close relatives: Chloroflexus aurantiacus
Comparison to close relatives: Chloroflexus islandicus
Comparison to close relatives: Roseiflexus castenholzii
Comparison to close relatives: Chloroflexus aggregans
Comparison to close relatives: Kallotenue papyrolyticum
Comparison to close relatives: Nonomuraea muscovyensis
Comparison to close relatives: Nonomuraea harbinensis
Comparison to close relatives: Nonomuraea typhae
Comparison to close relatives: Saccharothrix coeruleofusca
Comparison to close relatives: Nonomuraea endophytica
Comparison to close relatives: Streptomyces tendae
Comparison to close relatives: Saccharothrix espanaensis
Comparison to close relatives: Rhizohabitans arisaemae
Comparison to close relatives: Saccharothrix syringae
Comparison to close relatives: Friedmanniella luteola
Comparison to close relatives: Lentzea soli
Comparison to close relatives: Streptomyces violaceolatus
Comparison to close relatives: Streptomyces tirandamycinicus
Comparison to close relatives: Lentzea terrae
Comparison to close relatives: Saccharothrix carnea
Comparison to close relatives: Saccharothrix saharensis
Comparison to close relatives: Lentzea guizhouensis
Comparison to close relatives: Streptomyces tritolerans
Comparison to close relatives: Streptomyces mashuensis
Comparison to close relatives: Parvivirga hydrogeniphila
Comparison to close relatives: Streptomyces xiangluensis
Comparison to close relatives: Aggregatilinea lenta
Comparison to close relatives: Ktedonobacter racemifer
Comparison to close relatives: Allostreptomyces psammosilenae
Comparison to close relatives: Streptomyces coelescens
Comparison to close relatives: Geodermatophilus africanus
Comparison to close relatives: Thermosporothrix hazakensis
Comparison to close relatives: Geodermatophilus nigrescens
Comparison to close relatives: Peterkaempfera bronchialis
Comparison to close relatives: Actinoalloteichus nanshanensis
Comparison to close relatives: Geodermatophilus arenarius
Comparison to close relatives: Actinoplanes aksuensis
Comparison to close relatives: Lentzea albidocapillata subsp. violacea
Comparison to close relatives: Asanoa ishikariensis
Comparison to close relatives: Anaerolinea thermophila
Comparison to close relatives: Micromonospora thawaii
Comparison to close relatives: Asanoa ferruginea
Comparison to close relatives: Micromonospora fluminis
Comparison to close relatives: Micromonospora ferruginea
Comparison to close relatives: Ruminiclostridium hungatei
Comparison to close relatives: Paractinoplanes aksuensis
Comparison to close relatives: Streptomyces tricolor
Comparison to close relatives: Lentzea albidocapillata
Comparison to close relatives: Streptomyces violaceoruber
Carbon source: starch
Carbon source: cellulose
CAZyme: GH4
CAZyme: GH13
CAZyme: GH23
CAZyme: GH81
CAZyme: GH6
CAZyme: GH74
CAZyme: GH9
CAZyme: GH2
CAZyme: GH18
CAZyme: GH48
CAZyme: GH31
CAZyme: GH116
CAZyme: GH16
CAZyme: GH3
CAZyme: GH55
CAZyme: GH26
CAZyme: GH51
CAZyme: GH5
CAZyme: GH35
CAZyme: GH39

GCA_000018565.1 (CAZyme)
CAZyme: GH133
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GH57
Occurance: 2

GCA_000018565.1 (CAZyme)
CAZyme: GH42
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GH10
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GH99
Occurance: 2

GCA_000018565.1 (CAZyme)
CAZyme: GH19
Occurance: 5

GCA_000018565.1 (CAZyme)
CAZyme: GH8
Occurance: 3

GCA_000018565.1 (CAZyme)
CAZyme: GH28
Occurance: 2

GCA_000018565.1 (CAZyme)
CAZyme: GH20
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GH101
Occurance: 2

GCA_000018565.1 (CAZyme)
CAZyme: GH0
Occurance: 6

GCA_000018565.1 (CAZyme)
CAZyme: GH77
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GH43
Occurance: 3

GCA_000018565.1 (CAZyme)
CAZyme: GH73
Occurance: 2

GCA_000018565.1 (CAZyme)
CAZyme: GH1
Occurance: 11

GCA_000018565.1 (CAZyme)
CAZyme: GH29
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GH130
Occurance: 5

GCA_000018565.1 (CAZyme)
CAZyme: GH37
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GH27
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GH32
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GH114
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GT2
Occurance: 52

GCA_000018565.1 (CAZyme)
CAZyme: GT1
Occurance: 18

GCA_000018565.1 (CAZyme)
CAZyme: GT51
Occurance: 3

GCA_000018565.1 (CAZyme)
CAZyme: GT13
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GT4
Occurance: 76

GCA_000018565.1 (CAZyme)
CAZyme: GT89
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GT35
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GT0
Occurance: 6

GCA_000018565.1 (CAZyme)
CAZyme: GT83
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GT5
Occurance: 4

GCA_000018565.1 (CAZyme)
CAZyme: GT26
Occurance: 5

GCA_000018565.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_000018565.1 (CAZyme)
CAZyme: GT9
Occurance: 3

GCA_000018565.1 (CAZyme)
CAZyme: PL11
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: PL12
Occurance: 3

GCA_000018565.1 (CAZyme)
CAZyme: PL1
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: PL9
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: PL0
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: CE14
Occurance: 8

GCA_000018565.1 (CAZyme)
CAZyme: CE1
Occurance: 4

GCA_000018565.1 (CAZyme)
CAZyme: CE4
Occurance: 4

GCA_000018565.1 (CAZyme)
CAZyme: CE11
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: CE12
Occurance: 2

GCA_000018565.1 (CAZyme)
CAZyme: CE7
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: CBM57
Occurance: 5

GCA_000018565.1 (CAZyme)
CAZyme: CBM20
Occurance: 5

GCA_000018565.1 (CAZyme)
CAZyme: CBM34
Occurance: 2

GCA_000018565.1 (CAZyme)
CAZyme: CBM13
Occurance: 6

GCA_000018565.1 (CAZyme)
CAZyme: CBM2
Occurance: 30

GCA_000018565.1 (CAZyme)
CAZyme: CBM5
Occurance: 12

GCA_000018565.1 (CAZyme)
CAZyme: CBM12
Occurance: 12

GCA_000018565.1 (CAZyme)
CAZyme: CBM50
Occurance: 17

GCA_000018565.1 (CAZyme)
CAZyme: CBM4
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: CBM48
Occurance: 4

GCA_000018565.1 (CAZyme)
CAZyme: CBM23
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: CBM3
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: CBM32
Occurance: 6

GCA_000018565.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: CBM41
Occurance: 2

GCA_000018565.1 (CAZyme)
CAZyme: CBM59
Occurance: 2

GCA_000018565.1 (CAZyme)
CAZyme: CBM8
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: CBM9
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: CBM63
Occurance: 2

GCA_000018565.1 (CAZyme)
CAZyme: CBM73
Occurance: 1

GCA_000018565.1 (CAZyme)
CAZyme: CBM51
Occurance: 1

GCA_000018565.1 (Pathway)
Pathway: Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate
Metabolic module: M00001

GCA_000018565.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000018565.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000018565.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000018565.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000018565.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000018565.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000018565.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000018565.1 (Pathway)
Pathway: Glyoxylate cycle
Metabolic module: M00012

GCA_000018565.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000018565.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000018565.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000018565.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000018565.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000018565.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000018565.1 (Pathway)
Pathway: Lysine biosynthesis, mediated by LysW, 2-aminoadipate => lysine
Metabolic module: M00031

GCA_000018565.1 (Pathway)
Pathway: Methionine degradation
Metabolic module: M00035

GCA_000018565.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000018565.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000018565.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000018565.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000018565.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000018565.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000018565.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000018565.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000018565.1 (Pathway)
Pathway: Acylglycerol degradation
Metabolic module: M00098

GCA_000018565.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000018565.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000018565.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000018565.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_000018565.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000018565.1 (Pathway)
Pathway: Polyamine biosynthesis, arginine => ornithine => putrescine
Metabolic module: M00134

GCA_000018565.1 (Pathway)
Pathway: NADH:quinone oxidoreductase, prokaryotes
Metabolic module: M00144

GCA_000018565.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000018565.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000018565.1 (Pathway)
Pathway: Cysteine biosynthesis, homocysteine + serine => cysteine
Metabolic module: M00338

GCA_000018565.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000018565.1 (Pathway)
Pathway: Assimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00531

GCA_000018565.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000018565.1 (Pathway)
Pathway: UDP-Gal biosynthesis, Gal => UDP-Gal
Metabolic module: M00554

GCA_000018565.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_000018565.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000018565.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000018565.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000018565.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000018565.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCA_000018565.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCA_000018565.1 (Pathway)
Pathway: Sulfur reduction, sulfur => sulfide
Metabolic module: M00986

GCA_000018565.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000018565.1 (Pathway)
Pathway: GDP-D-Rha biosynthesis, GDP-Man => GDP-D-Rha
Metabolic module: M01018

GCA_000018565.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000018565.1 (Pathway)
Pathway: Glycogen degradation, glycogen => glucose-6P
Metabolic module: M00855

GCA_000018565.1 (Pathway)
Pathway: Glycogen biosynthesis, glucose-1P => glycogen/starch
Metabolic module: M00854

GCA_000018565.1 (Pathway)
Pathway: C5 isoprenoid biosynthesis, mevalonate pathway, archaea
Metabolic module: M00849

GCA_000018565.1 (Pathway)
Pathway: Pentose phosphate pathway (Pentose phosphate cycle)
Metabolic module: M00004

GCA_000018565.1 (Pathway)
Pathway: Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
Metabolic module: M00006

GCA_000018565.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000018565.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000018565.1 (Pathway)
Pathway: Histidine biosynthesis, PRPP => histidine
Metabolic module: M00026

GCA_000018565.1 (Pathway)
Pathway: Histidine degradation, histidine => N-formiminoglutamate => glutamate
Metabolic module: M00045

GCA_000018565.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000018565.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000018565.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000018565.1 (Pathway)
Pathway: beta-Oxidation
Metabolic module: M00087

GCA_000018565.1 (Pathway)
Pathway: Arabinoxylan degradation
Metabolic module: MF0001

GCA_000018565.1 (Pathway)
Pathway: Starch degradation
Metabolic module: MF0005

GCA_000018565.1 (Pathway)
Pathway: Lactose degradation
Metabolic module: MF0006

GCA_000018565.1 (Pathway)
Pathway: Melibiose degradation
Metabolic module: MF0009

GCA_000018565.1 (Pathway)
Pathway: Trehalose degradation II
Metabolic module: MF0012

GCA_000018565.1 (Pathway)
Pathway: Arabinose degradation
Metabolic module: MF0014

GCA_000018565.1 (Pathway)
Pathway: Fructose degradation
Metabolic module: MF0015

GCA_000018565.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000018565.1 (Pathway)
Pathway: Xylose degradation
Metabolic module: MF0021

GCA_000018565.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000018565.1 (Pathway)
Pathway: Leucine degradation
Metabolic module: MF0037

GCA_000018565.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_000018565.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000018565.1 (Pathway)
Pathway: Cysteine biosynthesis/homocysteine degradation
Metabolic module: MF0043

GCA_000018565.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000018565.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000018565.1 (Pathway)
Pathway: Arginine degradation IV
Metabolic module: MF0054

GCA_000018565.1 (Pathway)
Pathway: Glycerol degradation II
Metabolic module: MF0061

GCA_000018565.1 (Pathway)
Pathway: Glyoxylate bypass
Metabolic module: MF0063

GCA_000018565.1 (Pathway)
Pathway: Triacylglycerol degradation
Metabolic module: MF0064

GCA_000018565.1 (Pathway)
Pathway: Pentose phosphate pathway (oxidative phase)
Metabolic module: MF0070

GCA_000018565.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000018565.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000018565.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_000018565.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_000018565.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.01

GCA_000018565.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000018565.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000018565.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 4.3
Relative abundance (%): 0.08

GCA_000018565.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.04

GCA_000018565.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_000018565.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000018565.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.32

GCA_000018565.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.16

GCA_000018565.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 2.3
Relative abundance (%): 0.08

GCA_000018565.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000018565.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 18.1
Relative abundance (%): 0.09

GCA_000018565.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 12.3
Relative abundance (%): 0.03

GCA_000018565.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 6.3
Relative abundance (%): 0.18

GCA_000018565.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCA_000018565.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000018565.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000018565.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 1.2
Relative abundance (%): 0.06

GCA_000018565.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000018565.1 (MAGs)
MAGs: no MAG matches found