GCA_000017645.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Xanthobacter oligotrophicus
Comparison to close relatives: Xanthobacter autotrophicus
Comparison to close relatives: Xanthobacter viscosus
Comparison to close relatives: Xanthobacter dioxanivorans
Comparison to close relatives: Xanthobacter flavus
Comparison to close relatives: Aquabacter cavernae
Comparison to close relatives: Aquabacter spiritensis
Comparison to close relatives: Azorhizobium doebereinerae
Comparison to close relatives: Xanthobacter aminoxidans
Comparison to close relatives: Xanthobacter tagetidis
Comparison to close relatives: Azorhizobium oxalatiphilum
Comparison to close relatives: Xanthobacter agilis
Comparison to close relatives: Azorhizobium caulinodans
Comparison to close relatives: Ancylobacter lacus
Comparison to close relatives: Ancylobacter gelatini
Comparison to close relatives: Ancylobacter radicis
Comparison to close relatives: Ancylobacter dichloromethanicus
Comparison to close relatives: Ancylobacter polymorphus
Comparison to close relatives: Ancylobacter oerskovii
Comparison to close relatives: Ancylobacter novellus
Comparison to close relatives: Ancylobacter sonchi
Comparison to close relatives: Ancylobacter aquaticus
Comparison to close relatives: Ancylobacter rudongensis
Comparison to close relatives: Ancylobacter koreensis
Comparison to close relatives: Ancylobacter tetraedralis
Comparison to close relatives: Ancylobacter vacuolatus
Comparison to close relatives: Starkeya nomas
Comparison to close relatives: Ancylobacter moscoviensis
Comparison to close relatives: Ancylobacter crimeensis
Comparison to close relatives: Kaistia dalseonensis
Comparison to close relatives: Blastochloris viridis
Comparison to close relatives: Methylosinus trichosporium
Comparison to close relatives: Rhodoplanes tepidamans
Comparison to close relatives: Labrys wisconsinensis
Comparison to close relatives: Rhodoplanes tepidicaeni
Comparison to close relatives: Rhodoplanes elegans
Comparison to close relatives: Methylopila oligotropha
Comparison to close relatives: Hansschlegelia quercus
Comparison to close relatives: Beijerinckia indica subsp. indica
Comparison to close relatives: Methylocapsa acidiphila
Comparison to close relatives: Pseudolabrys taiwanensis
Comparison to close relatives: Phyllobacterium trifolii
Comparison to close relatives: Mesorhizobium tianshanense
Comparison to close relatives: Mesorhizobium tamadayense
Comparison to close relatives: Mesorhizobium comanense
Comparison to close relatives: Mesorhizobium jarvisii
Comparison to close relatives: Segnochrobactrum spirostomi
Comparison to close relatives: Chelativorans intermedius
Comparison to close relatives: Mesorhizobium erdmanii
Comparison to close relatives: Phreatobacter cathodiphilus
Comparison to close relatives: Beijerinckia indica
CAZyme: GH0
CAZyme: GH13
CAZyme: GH17
CAZyme: GH6
CAZyme: GH23
CAZyme: GH18
CAZyme: GH65
CAZyme: GH16
CAZyme: GH28
CAZyme: GH19
CAZyme: GH73
CAZyme: GH20
CAZyme: GH33
CAZyme: GH101
CAZyme: GH154
CAZyme: GH39
CAZyme: GH32
CAZyme: GH103
CAZyme: GH64
CAZyme: GH158
CAZyme: GH102
CAZyme: GH135
CAZyme: GH43
CAZyme: GH3
CAZyme: GH108

GCA_000017645.1 (CAZyme)
CAZyme: GT2
Occurance: 33

GCA_000017645.1 (CAZyme)
CAZyme: GT13
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: GT51
Occurance: 6

GCA_000017645.1 (CAZyme)
CAZyme: GT5
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: GT4
Occurance: 26

GCA_000017645.1 (CAZyme)
CAZyme: GT83
Occurance: 3

GCA_000017645.1 (CAZyme)
CAZyme: GT41
Occurance: 3

GCA_000017645.1 (CAZyme)
CAZyme: GT1
Occurance: 8

GCA_000017645.1 (CAZyme)
CAZyme: GT20
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: GT32
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: GT9
Occurance: 5

GCA_000017645.1 (CAZyme)
CAZyme: GT7
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: GT26
Occurance: 3

GCA_000017645.1 (CAZyme)
CAZyme: GT28
Occurance: 3

GCA_000017645.1 (CAZyme)
CAZyme: GT30
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: GT19
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: GT0
Occurance: 3

GCA_000017645.1 (CAZyme)
CAZyme: GT25
Occurance: 2

GCA_000017645.1 (CAZyme)
CAZyme: GT14
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: PL0
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: CE16
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: CE4
Occurance: 5

GCA_000017645.1 (CAZyme)
CAZyme: CE14
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: CE11
Occurance: 7

GCA_000017645.1 (CAZyme)
CAZyme: CE1
Occurance: 2

GCA_000017645.1 (CAZyme)
CAZyme: CE9
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: CE12
Occurance: 2

GCA_000017645.1 (CAZyme)
CAZyme: CBM50
Occurance: 21

GCA_000017645.1 (CAZyme)
CAZyme: CBM41
Occurance: 4

GCA_000017645.1 (CAZyme)
CAZyme: CBM5
Occurance: 3

GCA_000017645.1 (CAZyme)
CAZyme: CBM2
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: CBM51
Occurance: 2

GCA_000017645.1 (CAZyme)
CAZyme: CBM56
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_000017645.1 (CAZyme)
CAZyme: CBM13
Occurance: 3

GCA_000017645.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_000017645.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000017645.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000017645.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000017645.1 (Pathway)
Pathway: Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Metabolic module: M00008

GCA_000017645.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000017645.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000017645.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000017645.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000017645.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000017645.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000017645.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000017645.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000017645.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000017645.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000017645.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000017645.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000017645.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000017645.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000017645.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000017645.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000017645.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000017645.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000017645.1 (Pathway)
Pathway: Phosphatidylcholine (PC) biosynthesis, PE => PC
Metabolic module: M00091

GCA_000017645.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000017645.1 (Pathway)
Pathway: C5 isoprenoid biosynthesis, non-mevalonate pathway
Metabolic module: M00096

GCA_000017645.1 (Pathway)
Pathway: Lycopene biosynthesis, geranylgeranyl-PP => lycopene
Metabolic module: M00097

GCA_000017645.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000017645.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000017645.1 (Pathway)
Pathway: Pantothenate biosynthesis, valine/L-aspartate => pantothenate
Metabolic module: M00119

GCA_000017645.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000017645.1 (Pathway)
Pathway: Cobalamin biosynthesis, cobyrinate a, c-diamide => cobalamin
Metabolic module: M00122

GCA_000017645.1 (Pathway)
Pathway: Biotin biosynthesis, pimeloyl-ACP/CoA => biotin
Metabolic module: M00123

GCA_000017645.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000017645.1 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_000017645.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000017645.1 (Pathway)
Pathway: Cytochrome c oxidase, cbb3-type
Metabolic module: M00156

GCA_000017645.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000017645.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), light
Metabolic module: M00169

GCA_000017645.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, bacteria
Metabolic module: M00364

GCA_000017645.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000017645.1 (Pathway)
Pathway: Assimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00531

GCA_000017645.1 (Pathway)
Pathway: Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA
Metabolic module: M00545

GCA_000017645.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000017645.1 (Pathway)
Pathway: Catechol ortho-cleavage, catechol => 3-oxoadipate
Metabolic module: M00568

GCA_000017645.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_000017645.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000017645.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000017645.1 (Pathway)
Pathway: Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA
Metabolic module: M00741

GCA_000017645.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000017645.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000017645.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000017645.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000017645.1 (Pathway)
Pathway: Sulfide oxidation, sulfide => sulfur
Metabolic module: M00985

GCA_000017645.1 (Pathway)
Pathway: PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Metabolic module: M00988

GCA_000017645.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000017645.1 (Pathway)
Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA
Metabolic module: M00999

GCA_000017645.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000017645.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000017645.1 (Pathway)
Pathway: Adenine ribonucleotide degradation, AMP => Urate
Metabolic module: M00958

GCA_000017645.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000017645.1 (Pathway)
Pathway: Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
Metabolic module: M00896

GCA_000017645.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_000017645.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000017645.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000017645.1 (Pathway)
Pathway: Histidine biosynthesis, PRPP => histidine
Metabolic module: M00026

GCA_000017645.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000017645.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000017645.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000017645.1 (Pathway)
Pathway: beta-Oxidation
Metabolic module: M00087

GCA_000017645.1 (Pathway)
Pathway: C1-unit interconversion, prokaryotes
Metabolic module: M00140

GCA_000017645.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000017645.1 (Pathway)
Pathway: Galacturonate degradation II
Metabolic module: MF0023

GCA_000017645.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000017645.1 (Pathway)
Pathway: Alanine degradation I
Metabolic module: MF0033

GCA_000017645.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000017645.1 (Pathway)
Pathway: Leucine degradation
Metabolic module: MF0037

GCA_000017645.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_000017645.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000017645.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_000017645.1 (Pathway)
Pathway: Glutamine degradation I
Metabolic module: MF0046

GCA_000017645.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000017645.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000017645.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000017645.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000017645.1 (Pathway)
Pathway: Glycerol degradation II
Metabolic module: MF0061

GCA_000017645.1 (Pathway)
Pathway: Entner-Doudoroff pathway
Metabolic module: MF0066

GCA_000017645.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000017645.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_000017645.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000017645.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000017645.1 (Pathway)
Pathway: Formate conversion
Metabolic module: MF0077

GCA_000017645.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_000017645.1 (Pathway)
Pathway: Urea degradation
Metabolic module: MF0085

GCA_000017645.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000017645.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_000017645.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000017645.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 3.5
Relative abundance (%): 0.21

GCA_000017645.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_000017645.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.03

GCA_000017645.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 12.1
Relative abundance (%): 0.08

GCA_000017645.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0.3
Relative abundance (%): 0.1

GCA_000017645.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 1.3
Relative abundance (%): 0.01

GCA_000017645.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.01

GCA_000017645.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 1.4
Relative abundance (%): 0.06

GCA_000017645.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 5.1
Relative abundance (%): 0.55

GCA_000017645.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 5.2
Relative abundance (%): 0.06

GCA_000017645.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.19

GCA_000017645.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 34.9
Relative abundance (%): 0.09

GCA_000017645.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 46.5
Relative abundance (%): 0.07

GCA_000017645.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 3
Relative abundance (%): 0.07

GCA_000017645.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 1.3
Relative abundance (%): 0.28

GCA_000017645.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.01

GCA_000017645.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.8
Relative abundance (%): 0

GCA_000017645.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 4.8
Relative abundance (%): 0.11

GCA_000017645.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_000017645.1 (MAGs)
MAGs: no MAG matches found