GCA_000016765.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Rhizorhabdus histidinilytica
Comparison to close relatives: Rhizorhabdus phycosphaerae
Comparison to close relatives: Rhizorhabdus dicambivorans
Comparison to close relatives: Sphingomonas formosensis
Comparison to close relatives: Sphingomonas crocodyli
Comparison to close relatives: Sphingomonas laterariae
Comparison to close relatives: Sphingomonas profundi
Comparison to close relatives: Sphingobium jiangsuense
Comparison to close relatives: Sphingomonas nostoxanthinifaciens
Comparison to close relatives: Sphingobium herbicidovorans
Comparison to close relatives: Sphingomonas sanxanigenens
Comparison to close relatives: Sphingobium mellinum
Comparison to close relatives: Sphingobium baderi
Comparison to close relatives: Sphingomonas morindae
Comparison to close relatives: Sphingomonas zeicaulis
Comparison to close relatives: Rhizorhabdus argentea
Comparison to close relatives: Sphingobium fuliginis
Comparison to close relatives: Sphingomonas naphthae
Comparison to close relatives: Rhizorhabdus starnbergensis
Comparison to close relatives: Sphingomonas quercus
Comparison to close relatives: Sphingomonas vulcanisoli
Comparison to close relatives: Sphingomonas colocasiae
Comparison to close relatives: Hephaestia mangrovi
Comparison to close relatives: Sphingomonas fennica
Comparison to close relatives: Sphingomonas montanisoli
Comparison to close relatives: Stakelama flava
Comparison to close relatives: Sphingomonas gilva
Comparison to close relatives: Sphingomonas koreensis
Comparison to close relatives: Sphingomonas cavernae
Comparison to close relatives: Sphingobium amiense
Comparison to close relatives: Sphingomonas flavalba
Comparison to close relatives: Sphingomonas paucimobilis
Comparison to close relatives: Sphingomonas azotifigens
Comparison to close relatives: Sphingomonas trueperi
Comparison to close relatives: Sphingomonas hominis
Comparison to close relatives: Sphingomonas japonica
Comparison to close relatives: Sphingomonas haloaromaticamans
Comparison to close relatives: Sphingomonas oleivorans
Comparison to close relatives: Rhizorhabdus wittichii
Comparison to close relatives: Sphingomonas jeddahensis
Comparison to close relatives: Sphingomonas arantia
Comparison to close relatives: Sphingomonas prati
Comparison to close relatives: Sphingomonas solaris
Comparison to close relatives: Sphingomonas cannabina
Comparison to close relatives: Sphingobium lignivorans
Comparison to close relatives: Sphingomonas citricola
Comparison to close relatives: Sphingomonas folii
Comparison to close relatives: Sphingobium indicum
Comparison to close relatives: Sphingomonas citri
Comparison to close relatives: Sphingobium quisquiliarum
CAZyme: GH13
CAZyme: GH18
CAZyme: GH106
CAZyme: GH6
CAZyme: GH43
CAZyme: GH16
CAZyme: GH65
CAZyme: GH24
CAZyme: GH23
CAZyme: GH28
CAZyme: GH15
CAZyme: GH20
CAZyme: GH101
CAZyme: GH130
CAZyme: GH102
CAZyme: GH103
CAZyme: GH135
CAZyme: GH0
CAZyme: GH3
CAZyme: GH1
CAZyme: GH19
CAZyme: GH108
CAZyme: GT2
CAZyme: GT4
CAZyme: GT13
CAZyme: GT51

GCA_000016765.1 (CAZyme)
CAZyme: GT25
Occurance: 2

GCA_000016765.1 (CAZyme)
CAZyme: GT41
Occurance: 1

GCA_000016765.1 (CAZyme)
CAZyme: GT0
Occurance: 4

GCA_000016765.1 (CAZyme)
CAZyme: GT1
Occurance: 33

GCA_000016765.1 (CAZyme)
CAZyme: GT107
Occurance: 1

GCA_000016765.1 (CAZyme)
CAZyme: GT26
Occurance: 4

GCA_000016765.1 (CAZyme)
CAZyme: GT28
Occurance: 4

GCA_000016765.1 (CAZyme)
CAZyme: GT20
Occurance: 2

GCA_000016765.1 (CAZyme)
CAZyme: GT21
Occurance: 2

GCA_000016765.1 (CAZyme)
CAZyme: PL0
Occurance: 2

GCA_000016765.1 (CAZyme)
CAZyme: CE4
Occurance: 2

GCA_000016765.1 (CAZyme)
CAZyme: CE6
Occurance: 4

GCA_000016765.1 (CAZyme)
CAZyme: CE14
Occurance: 1

GCA_000016765.1 (CAZyme)
CAZyme: CE9
Occurance: 7

GCA_000016765.1 (CAZyme)
CAZyme: CE11
Occurance: 2

GCA_000016765.1 (CAZyme)
CAZyme: CE0
Occurance: 1

GCA_000016765.1 (CAZyme)
CAZyme: CE12
Occurance: 3

GCA_000016765.1 (CAZyme)
CAZyme: CBM20
Occurance: 1

GCA_000016765.1 (CAZyme)
CAZyme: CBM51
Occurance: 4

GCA_000016765.1 (CAZyme)
CAZyme: CBM41
Occurance: 3

GCA_000016765.1 (CAZyme)
CAZyme: CBM50
Occurance: 11

GCA_000016765.1 (CAZyme)
CAZyme: CBM9
Occurance: 2

GCA_000016765.1 (CAZyme)
CAZyme: CBM13
Occurance: 2

GCA_000016765.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCA_000016765.1 (CAZyme)
CAZyme: CBM47
Occurance: 1

GCA_000016765.1 (CAZyme)
CAZyme: CBM32
Occurance: 1

GCA_000016765.1 (CAZyme)
CAZyme: CBM5
Occurance: 2

GCA_000016765.1 (CAZyme)
CAZyme: CBM57
Occurance: 1

GCA_000016765.1 (CAZyme)
CAZyme: CBM48
Occurance: 1

GCA_000016765.1 (Pathway)
Pathway: Glycolysis, core module involving three-carbon compounds
Metabolic module: M00002

GCA_000016765.1 (Pathway)
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Metabolic module: M00003

GCA_000016765.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCA_000016765.1 (Pathway)
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Metabolic module: M00007

GCA_000016765.1 (Pathway)
Pathway: Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Metabolic module: M00008

GCA_000016765.1 (Pathway)
Pathway: Citrate cycle (TCA cycle, Krebs cycle)
Metabolic module: M00009

GCA_000016765.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCA_000016765.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000016765.1 (Pathway)
Pathway: Glyoxylate cycle
Metabolic module: M00012

GCA_000016765.1 (Pathway)
Pathway: Proline biosynthesis, glutamate => proline
Metabolic module: M00015

GCA_000016765.1 (Pathway)
Pathway: Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Metabolic module: M00016

GCA_000016765.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCA_000016765.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCA_000016765.1 (Pathway)
Pathway: Serine biosynthesis, glycerate-3P => serine
Metabolic module: M00020

GCA_000016765.1 (Pathway)
Pathway: Cysteine biosynthesis, serine => cysteine
Metabolic module: M00021

GCA_000016765.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCA_000016765.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCA_000016765.1 (Pathway)
Pathway: Tyrosine biosynthesis, chorismate => arogenate => tyrosine
Metabolic module: M00040

GCA_000016765.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCA_000016765.1 (Pathway)
Pathway: Guanine ribonucleotide biosynthesis, IMP => GDP, GTP
Metabolic module: M00050

GCA_000016765.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000016765.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000016765.1 (Pathway)
Pathway: beta-Oxidation, acyl-CoA synthesis
Metabolic module: M00086

GCA_000016765.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000016765.1 (Pathway)
Pathway: Phosphatidylcholine (PC) biosynthesis, PE => PC
Metabolic module: M00091

GCA_000016765.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000016765.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCA_000016765.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000016765.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000016765.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000016765.1 (Pathway)
Pathway: Polyamine biosynthesis, arginine => ornithine => putrescine
Metabolic module: M00134

GCA_000016765.1 (Pathway)
Pathway: Succinate dehydrogenase, prokaryotes
Metabolic module: M00149

GCA_000016765.1 (Pathway)
Pathway: Cytochrome bc1 complex respiratory unit
Metabolic module: M00151

GCA_000016765.1 (Pathway)
Pathway: Cytochrome bd ubiquinol oxidase
Metabolic module: M00153

GCA_000016765.1 (Pathway)
Pathway: Cytochrome c oxidase, cbb3-type
Metabolic module: M00156

GCA_000016765.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), dark
Metabolic module: M00168

GCA_000016765.1 (Pathway)
Pathway: CAM (Crassulacean acid metabolism), light
Metabolic module: M00169

GCA_000016765.1 (Pathway)
Pathway: Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Metabolic module: M00432

GCA_000016765.1 (Pathway)
Pathway: Assimilatory nitrate reduction, nitrate => ammonia
Metabolic module: M00531

GCA_000016765.1 (Pathway)
Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc
Metabolic module: M00549

GCA_000016765.1 (Pathway)
Pathway: Catechol ortho-cleavage, catechol => 3-oxoadipate
Metabolic module: M00568

GCA_000016765.1 (Pathway)
Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
Metabolic module: M00569

GCA_000016765.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCA_000016765.1 (Pathway)
Pathway: Glycine cleavage system
Metabolic module: M00621

GCA_000016765.1 (Pathway)
Pathway: Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA
Metabolic module: M00741

GCA_000016765.1 (Pathway)
Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolic module: M00793

GCA_000016765.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCA_000016765.1 (Pathway)
Pathway: Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
Metabolic module: M00881

GCA_000016765.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000016765.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000016765.1 (Pathway)
Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA
Metabolic module: M00999

GCA_000016765.1 (Pathway)
Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man
Metabolic module: M01000

GCA_000016765.1 (Pathway)
Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA
Metabolic module: M01036

GCA_000016765.1 (Pathway)
Pathway: Zeaxanthin biosynthesis, lycopene => beta-carotene => zeaxanthin
Metabolic module: M01045

GCA_000016765.1 (Pathway)
Pathway: Methylcitrate cycle
Metabolic module: M00982

GCA_000016765.1 (Pathway)
Pathway: Adenine ribonucleotide degradation, AMP => Urate
Metabolic module: M00958

GCA_000016765.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_000016765.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000016765.1 (Pathway)
Pathway: Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
Metabolic module: M00896

GCA_000016765.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCA_000016765.1 (Pathway)
Pathway: Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
Metabolic module: M00022

GCA_000016765.1 (Pathway)
Pathway: Tryptophan biosynthesis, chorismate => tryptophan
Metabolic module: M00023

GCA_000016765.1 (Pathway)
Pathway: Histidine biosynthesis, PRPP => histidine
Metabolic module: M00026

GCA_000016765.1 (Pathway)
Pathway: Histidine degradation, histidine => N-formiminoglutamate => glutamate
Metabolic module: M00045

GCA_000016765.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000016765.1 (Pathway)
Pathway: Fatty acid biosynthesis, initiation
Metabolic module: M00082

GCA_000016765.1 (Pathway)
Pathway: Fatty acid biosynthesis, elongation
Metabolic module: M00083

GCA_000016765.1 (Pathway)
Pathway: beta-Oxidation
Metabolic module: M00087

GCA_000016765.1 (Pathway)
Pathway: Tetrahydrofolate biosynthesis, GTP => THF
Metabolic module: M00126

GCA_000016765.1 (Pathway)
Pathway: Mannose degradation
Metabolic module: MF0018

GCA_000016765.1 (Pathway)
Pathway: Aspartate degradation I
Metabolic module: MF0028

GCA_000016765.1 (Pathway)
Pathway: Alanine degradation I
Metabolic module: MF0033

GCA_000016765.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCA_000016765.1 (Pathway)
Pathway: Glycine degradation
Metabolic module: MF0035

GCA_000016765.1 (Pathway)
Pathway: Methionine degradation I
Metabolic module: MF0038

GCA_000016765.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000016765.1 (Pathway)
Pathway: Cysteine degradation I
Metabolic module: MF0044

GCA_000016765.1 (Pathway)
Pathway: Cysteine degradation II
Metabolic module: MF0045

GCA_000016765.1 (Pathway)
Pathway: Glutamine degradation I
Metabolic module: MF0046

GCA_000016765.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCA_000016765.1 (Pathway)
Pathway: Serine degradation
Metabolic module: MF0048

GCA_000016765.1 (Pathway)
Pathway: Threonine degradation II
Metabolic module: MF0050

GCA_000016765.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCA_000016765.1 (Pathway)
Pathway: Arginine degradation IV
Metabolic module: MF0054

GCA_000016765.1 (Pathway)
Pathway: Histidine degradation
Metabolic module: MF0056

GCA_000016765.1 (Pathway)
Pathway: Glyoxylate bypass
Metabolic module: MF0063

GCA_000016765.1 (Pathway)
Pathway: Entner-Doudoroff pathway
Metabolic module: MF0066

GCA_000016765.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000016765.1 (Pathway)
Pathway: NADH:ferredoxin oxidoreductase
Metabolic module: MF0069

GCA_000016765.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000016765.1 (Pathway)
Pathway: Pyruvate dehydrogenase complex
Metabolic module: MF0072

GCA_000016765.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCA_000016765.1 (Pathway)
Pathway: Formate conversion
Metabolic module: MF0077

GCA_000016765.1 (Pathway)
Pathway: Lactate consumption I
Metabolic module: MF0079

GCA_000016765.1 (Pathway)
Pathway: Acetyl-CoA to crotonyl-CoA
Metabolic module: MF0087

GCA_000016765.1 (Pathway)
Pathway: Lactate production
Metabolic module: MF0092

GCA_000016765.1 (Pathway)
Pathway: Succinate production
Metabolic module: MF0096

GCA_000016765.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 6.7
Relative abundance (%): 0.11

GCA_000016765.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.4
Relative abundance (%): 0.04

GCA_000016765.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0.5
Relative abundance (%): 0.01

GCA_000016765.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 28.7
Relative abundance (%): 0.09

GCA_000016765.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 3.3
Relative abundance (%): 0.45

GCA_000016765.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 4.1
Relative abundance (%): 0.02

GCA_000016765.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 1.9
Relative abundance (%): 0.02

GCA_000016765.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 3.3
Relative abundance (%): 0.09

GCA_000016765.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 33.8
Relative abundance (%): 0.44

GCA_000016765.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 39.7
Relative abundance (%): 0.43

GCA_000016765.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.6
Relative abundance (%): 0.06

GCA_000016765.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 20.2
Relative abundance (%): 0.03

GCA_000016765.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 24.5
Relative abundance (%): 0.12

GCA_000016765.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 65.6
Relative abundance (%): 0.31

GCA_000016765.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 4.5
Relative abundance (%): 0.29

GCA_000016765.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.8
Relative abundance (%): 0.18

GCA_000016765.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 2.1
Relative abundance (%): 0.02

GCA_000016765.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 4.3
Relative abundance (%): 0.14

GCA_000016765.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 1.2
Relative abundance (%): 1.01

GCA_000016765.1 (MAGs)
MAGs: no MAG matches found