GCA_000008885.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Bacteria
Comparison to close relatives: Sodalis praecaptivus
Comparison to close relatives: Symbiopectobacterium purcellii
Comparison to close relatives: Budvicia aquatica
Comparison to close relatives: Budvicia diplopodorum
Comparison to close relatives: Chimaeribacter californicus
Comparison to close relatives: Chimaeribacter coloradensis
Comparison to close relatives: Yersinia massiliensis
Comparison to close relatives: Serratia inhibens
Comparison to close relatives: Yersinia canariae
Comparison to close relatives: Ewingella americana
Comparison to close relatives: Pectobacterium brasiliense
Comparison to close relatives: Chimaeribacter arupi
Comparison to close relatives: Cronobacter condimenti
Comparison to close relatives: Sodalis glossinidius
Comparison to close relatives: Serratia plymuthica
Comparison to close relatives: Pectobacterium polaris
Comparison to close relatives: Pectobacterium quasiaquaticum
Comparison to close relatives: Rouxiella badensis
Comparison to close relatives: Plesiomonas shigelloides
Comparison to close relatives: Serratia entomophila
Comparison to close relatives: Yersinia rohdei
Comparison to close relatives: Serratia rubidaea
Comparison to close relatives: Pseudocitrobacter vendiensis
Comparison to close relatives: Lonsdalea quercina
Comparison to close relatives: Edwardsiella ictaluri
Comparison to close relatives: Pectobacterium versatile
Comparison to close relatives: Serratia liquefaciens
Comparison to close relatives: Dickeya fangzhongdai
Comparison to close relatives: Yersinia hibernica
Comparison to close relatives: Pectobacterium fontis
Comparison to close relatives: Serratia marcescens
Comparison to close relatives: Enterobacter chuandaensis
Comparison to close relatives: Pectobacterium wasabiae
Comparison to close relatives: Enterobacter wuhouensis
Comparison to close relatives: Enterobacter quasiroggenkampii
Comparison to close relatives: Citrobacter portucalensis
Comparison to close relatives: Rouxiella silvae
Comparison to close relatives: Cedecea davisae
Comparison to close relatives: Pectobacterium atrosepticum
Comparison to close relatives: Pectobacterium betavasculorum
Comparison to close relatives: Enterobacter dykesii
Comparison to close relatives: Enterobacter vonholyi
Comparison to close relatives: Enterobacter quasimori
Comparison to close relatives: Pectobacterium aroidearum
Comparison to close relatives: Klebsiella aerogenes
Comparison to close relatives: Citrobacter meridianamericanus
Comparison to close relatives: Enterobacter quasihormaechei
Comparison to close relatives: Pectobacterium parmentieri
Comparison to close relatives: Enterobacter hormaechei subsp. xiangfangensis
Comparison to close relatives: Pectobacterium punjabense
Comparison to close relatives: Lonsdalea britannica
Comparison to close relatives: Enterobacter hormaechei
Comparison to close relatives: Pectobacterium carotovorum
CAZyme: GH13
CAZyme: GH28
CAZyme: GH73
CAZyme: GH23
CAZyme: GH18
CAZyme: GT13
CAZyme: GT2
CAZyme: GT83
CAZyme: GT51
CAZyme: GT4
CAZyme: GT22
CAZyme: GT28
CAZyme: GT30
CAZyme: GT19
CAZyme: CE11
CAZyme: CBM13
CAZyme: CBM50
CAZyme: CBM2
Pathway: Glycolysis, core module involving three-carbon compounds
Pathway: Gluconeogenesis, oxaloacetate => fructose-6P
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Pathway: Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
Pathway: Citrate cycle (TCA cycle, Krebs cycle)

GCA_000008885.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCA_000008885.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCA_000008885.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCA_000008885.1 (Pathway)
Pathway: Triacylglycerol biosynthesis
Metabolic module: M00089

GCA_000008885.1 (Pathway)
Pathway: Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Metabolic module: M00093

GCA_000008885.1 (Pathway)
Pathway: Glutathione biosynthesis, glutamate => glutathione
Metabolic module: M00118

GCA_000008885.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCA_000008885.1 (Pathway)
Pathway: Heme biosynthesis, plants and bacteria, glutamate => heme
Metabolic module: M00121

GCA_000008885.1 (Pathway)
Pathway: Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Metabolic module: M00125

GCA_000008885.1 (Pathway)
Pathway: F-type ATPase, prokaryotes and chloroplasts
Metabolic module: M00157

GCA_000008885.1 (Pathway)
Pathway: Cytochrome o ubiquinol oxidase
Metabolic module: M00417

GCA_000008885.1 (Pathway)
Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
Metabolic module: M00579

GCA_000008885.1 (Pathway)
Pathway: Proline degradation, proline => glutamate
Metabolic module: M00970

GCA_000008885.1 (Pathway)
Pathway: UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
Metabolic module: M00995

GCA_000008885.1 (Pathway)
Pathway: Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Metabolic module: M00938

GCA_000008885.1 (Pathway)
Pathway: UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
Metabolic module: M00909

GCA_000008885.1 (Pathway)
Pathway: Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
Metabolic module: M00896

GCA_000008885.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCA_000008885.1 (Pathway)
Pathway: Aspartate degradation II
Metabolic module: MF0029

GCA_000008885.1 (Pathway)
Pathway: Proline degradation
Metabolic module: MF0040

GCA_000008885.1 (Pathway)
Pathway: Glycolysis (pay-off phase)
Metabolic module: MF0068

GCA_000008885.1 (Pathway)
Pathway: Pentose phosphate pathway (non-oxidative branch)
Metabolic module: MF0071

GCA_000008885.1 (Pathway)
Pathway: Acetyl-CoA to acetate
Metabolic module: MF0086

GCA_000008885.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCA_000008885.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCA_000008885.1 (MAGs)
MAGs: no MAG matches found